9KSN
Crystal structure of meso-diaminopimelate dehydrogenase from Bacillus thermozeamaize mutant M9 complexed with NADP+
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Meso-diaminopimelate D-dehydrogenase | polymer | 347 | 38187.9 | 3 | UniProt (A0A1Y3PXT7) Pfam (PF01408) Pfam (PF16654) | Bacillus thermozeamaize | DAPDH,Meso-DAP dehydrogenase |
| 2 | D, H, O (A, B, C) | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | non-polymer | 743.4 | 3 | Chemie (NAP) | |||
| 3 | E, I, P, Q (A, B, C) | OXAMIC ACID | non-polymer | 89.0 | 4 | Chemie (OXM) | |||
| 4 | F, J, K, L, N... (A, B, C) | IMIDAZOLE | non-polymer | 69.1 | 6 | Chemie (IMD) | |||
| 5 | G, M (A, B) | ACETIC ACID | non-polymer | 60.1 | 2 | Chemie (ACY) | |||
| 6 | S, T, U (A, B, C) | water | water | 18.0 | 45 | Chemie (HOH) |
Sequence modifications
A, B, C: 1 - 307 (UniProt: A0A1Y3PXT7)
| PDB | External Database | Details |
|---|---|---|
| Met -39 | - | initiating methionine |
| Gly -38 | - | expression tag |
| Ser -37 | - | expression tag |
| Ser -36 | - | expression tag |
| His -35 | - | expression tag |
| His -34 | - | expression tag |
| His -33 | - | expression tag |
| His -32 | - | expression tag |
| His -31 | - | expression tag |
| His -30 | - | expression tag |
| Ser -29 | - | expression tag |
| Gly -28 | - | expression tag |
| Ile -27 | - | expression tag |
| Val -26 | - | expression tag |
| Pro -25 | - | expression tag |
| Arg -24 | - | expression tag |
| Gly -23 | - | expression tag |
| Ser -22 | - | expression tag |
| His -21 | - | expression tag |
| Met -20 | - | expression tag |
| Ala -19 | - | expression tag |
| Ser -18 | - | expression tag |
| Met -17 | - | expression tag |
| Thr -16 | - | expression tag |
| Gly -15 | - | expression tag |
| Gly -14 | - | expression tag |
| Gly -13 | - | expression tag |
| Gln -12 | - | expression tag |
| Met -11 | - | expression tag |
| Gly -10 | - | expression tag |
| Arg -9 | - | expression tag |
| Gly -8 | - | expression tag |
| Ser -7 | - | expression tag |
| Glu -6 | - | expression tag |
| Phe -5 | - | expression tag |
| Glu -4 | - | expression tag |
| Leu -3 | - | expression tag |
| Arg -2 | - | expression tag |
| Arg -1 | - | expression tag |
| Gln 0 | - | expression tag |
| Tyr 79 | Arg 79 | conflict |
| Leu 129 | Trp 129 | conflict |
| Leu 130 | Asp 130 | conflict |
| Cys 134 | Asp 134 | conflict |
| Val 154 | Phe 154 | conflict |
| Ser 161 | Gly 161 | conflict |
| Ala 162 | His 162 | conflict |
| Ala 177 | Ser 177 | conflict |
| Ile 179 | Thr 179 | conflict |
| Leu 213 | Tyr 213 | conflict |
| Ile 235 | His 235 | conflict |
| Ala 236 | Gly 236 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 114563.8 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 3121.0 | |
| All* | Total formula weight | 117684.8 |
