9K6J
Crystal structure of SARS-CoV-2 WT RBD bound with P5-1C8 Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C) | Spike protein S1 | polymer | 271 | 30512.3 | 1 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 | |
| 2 | B (A) | H chain of P5-1C8 Fab | polymer | 217 | 23207.9 | 1 | Homo sapiens | ||
| 3 | C (B) | L chain of P5-1C8 Fab | polymer | 211 | 22967.5 | 1 | Homo sapiens | ||
| 4 | D (C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 5 | E, F, G (C, A, B) | water | water | 18.0 | 157 | Chemie (HOH) |
Sequence modifications
C: 319 - 536 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Met 300 | - | initiating methionine |
| Gly 301 | - | expression tag |
| Trp 302 | - | expression tag |
| Ser 303 | - | expression tag |
| Cys 304 | - | expression tag |
| Ile 305 | - | expression tag |
| Ile 306 | - | expression tag |
| Leu 307 | - | expression tag |
| Phe 308 | - | expression tag |
| Leu 309 | - | expression tag |
| Val 310 | - | expression tag |
| Ala 311 | - | expression tag |
| Thr 312 | - | expression tag |
| Ala 313 | - | expression tag |
| Thr 314 | - | expression tag |
| Gly 315 | - | expression tag |
| Val 316 | - | expression tag |
| His 317 | - | expression tag |
| Ser 318 | - | expression tag |
| - | Leu 517 | deletion |
| His 537 | - | expression tag |
| His 538 | - | expression tag |
| His 539 | - | expression tag |
| His 540 | - | expression tag |
| His 541 | - | expression tag |
| His 542 | - | expression tag |
| His 543 | - | expression tag |
| His 544 | - | expression tag |
| Gln 545 | - | expression tag |
| Pro 546 | - | expression tag |
| Arg 547 | - | expression tag |
| Phe 548 | - | expression tag |
| Ala 549 | - | expression tag |
| Ala 550 | - | expression tag |
| Ala 551 | - | expression tag |
| Ala 552 | - | expression tag |
| Ser 553 | - | expression tag |
| Ser 554 | - | expression tag |
| Ala 555 | - | expression tag |
| Gly 556 | - | expression tag |
| Leu 557 | - | expression tag |
| Asn 558 | - | expression tag |
| Asp 559 | - | expression tag |
| Ile 560 | - | expression tag |
| Phe 561 | - | expression tag |
| Glu 562 | - | expression tag |
| Ala 563 | - | expression tag |
| Gln 564 | - | expression tag |
| Lys 565 | - | expression tag |
| Ile 566 | - | expression tag |
| Glu 567 | - | expression tag |
| Trp 568 | - | expression tag |
| His 569 | - | expression tag |
| Glu 570 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 76687.7 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 221.2 | |
| All* | Total formula weight | 76908.9 |
