9IN8
True-atomic resolution crystal structure of the open state of the viral channelrhodopsin OLPVR1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Viral rhodopsin OLPVR1 | polymer | 231 | 28127.3 | 1 | UniProt (F2Y337) UniProt (by SIFTS) (A0ACD6B8J1) | Organic Lake phycodnavirus | |
| 2 | B (A) | RETINAL | non-polymer | 284.4 | 1 | Chemie (RET) PubChem (1070) PubChem (23254473) PubChem (177675058) PubChem (638015) PubChem (5353924) PubChem (6436079) PubChem (6436082) PubChem (87082476) PubChem (87110449) PubChem (87110609) PubChem (88398773) PubChem (88407543) PubChem (11426127) PubChem (12227253) PubChem (12227254) PubChem (12227256) PubChem (12227257) PubChem (12227258) PubChem (12227259) PubChem (12227269) PubChem (12227270) PubChem (12227271) PubChem (5280490) PubChem (5381765) PubChem (134688327) PubChem (140510408) PubChem (145826762) PubChem (169423542) PubChem (172878320) | |||
| 3 | C (A) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) PubChem (923) | |||
| 4 | D (A) | (2S)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate | non-polymer | 328.5 | 1 | Chemie (97N) | |||
| 5 | E, R, S, T, U... (A) | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate | non-polymer | 356.5 | 6 | Chemie (OLC) PubChem (25021708) PubChem (46840179) PubChem (54294271) PubChem (54294270) PubChem (5283468) PubChem (5364833) PubChem (33022) PubChem (11451146) PubChem (12178130) | |||
| 6 | F, G, H, I, J... (A) | EICOSANE | non-polymer | 282.5 | 9 | Chemie (LFA) PubChem (8222) | |||
| 7 | O, P, Q (A) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) PubChem (753) | |||
| 8 | W (A) | water | water | 18.0 | 151 | Chemie (HOH) |
Sequence modifications
A: 1 - 223 (UniProt: F2Y337)
| PDB | External Database | Details |
|---|---|---|
| Leu 224 | - | expression tag |
| Glu 225 | - | expression tag |
| His 226 | - | expression tag |
| His 227 | - | expression tag |
| His 228 | - | expression tag |
| His 229 | - | expression tag |
| His 230 | - | expression tag |
| His 231 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 28127.3 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 5594.4 | |
| All* | Total formula weight | 33721.7 |
