9IN8
True-atomic resolution crystal structure of the open state of the viral channelrhodopsin OLPVR1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-03-21 |
Detector | DECTRIS EIGER2 X CdTe 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 46.427, 115.029, 53.337 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.110 - 1.340 |
R-factor | 0.1853 |
Rwork | 0.184 |
R-free | 0.21200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7aky |
RMSD bond length | 0.008 |
RMSD bond angle | 0.902 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.050 | 1.460 |
High resolution limit [Å] | 1.340 | 1.340 |
Rpim | 0.024 | 1.331 |
Number of reflections | 47593 | 2380 |
<I/σ(I)> | 16.1 | 0.7 |
Completeness [%] | 93.8 | 57.8 |
Redundancy | 13.1 | 12.6 |
CC(1/2) | 0.999 | 0.175 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 8 | 293 | 100 mM Tris, 900 mM NaCl, and 24% (w/v) PEG 6000 |