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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9I78

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(1)		Translocon Sec61/SecY plug domain-containing proteinpolymer47652322.31UniProt (G0SHC8)
Pfam (PF10559)
Pfam (PF00344)		Thermochaetoides thermophila DSM 1495
2B
(2)		SEC61 beta subunitpolymer12412552.31Thermochaetoides thermophila DSM 1495
3C
(3)		SEC61 gamma subunitpolymer707818.21UniProt (G0SFD9)
Pfam (PF00584)		Thermochaetoides thermophila DSM 1495
4D
(4)		CCDC47polymer45551723.91UniProt (G0S5M5)
Pfam (PF07946)		Thermochaetoides thermophila DSM 1495
5E
(6)		Putative inorganic phosphate transporter proteinpolymer22424180.21UniProt (G0RYQ7)
Pfam (PF10032)		Thermochaetoides thermophila DSM 1495
6F
(7)		Translocon-associated protein subunit alphapolymer27829964.11UniProt (G0SGC8)
Pfam (PF03896)		Thermochaetoides thermophila DSM 1495
7G
(LA)		60S ribosomal protein L2-like proteinpolymer25427598.91UniProt (G0S4P8)
Pfam (PF00181)
Pfam (PF03947)		Thermochaetoides thermophila DSM 1495
8H
(LB)		60S ribosomal protein L3-like proteinpolymer39244456.91UniProt (G0RXW1)
Pfam (PF00297)		Thermochaetoides thermophila DSM 1495
9I
(LC)		60S ribosomal protein L4-like proteinpolymer36539439.91UniProt (G0SFC3)
Pfam (PF00573)
Pfam (PF14374)		Thermochaetoides thermophila DSM 1495
10J
(LD)		60S ribosomal protein l5-like proteinpolymer30435034.61UniProt (G0SEG2)
Pfam (PF17144)
Pfam (PF14204)		Thermochaetoides thermophila DSM 1495
11K
(LE)		60S ribosomal protein L6polymer20022133.01UniProt (G0S0D6)
Pfam (PF01159)		Thermochaetoides thermophila DSM 1495
12L
(LF)		60S ribosomal protein l7-like proteinpolymer24928821.81UniProt (G0SFL0)
Pfam (PF08079)
Pfam (PF00327)		Thermochaetoides thermophila DSM 1495
13M
(LG)		60S ribosomal protein L8polymer26229744.51UniProt (G0SAJ9)
Pfam (PF01248)		Thermochaetoides thermophila DSM 1495
14N
(LH)		60S ribosomal protein l9-like proteinpolymer19221582.11UniProt (G0S0E5)
Pfam (PF00347)		Thermochaetoides thermophila DSM 1495
15O
(LI)		60S ribosomal protein L10-like proteinpolymer21925255.41UniProt (G0SEI1)
Pfam (PF00252)		Thermochaetoides thermophila DSM 1495
16P
(LJ)		Putative ribosomal proteinpolymer17320119.31UniProt (G0SHQ2)
Pfam (PF00281)
Pfam (PF00673)		Thermochaetoides thermophila DSM 1495
17Q
(LL)		60S ribosomal protein L13polymer21324191.21UniProt (G0S992)
Pfam (PF01294)		Thermochaetoides thermophila DSM 1495
18R
(LM)		60S ribosomal protein L14-like proteinpolymer14216111.91UniProt (G0S1R0)
Pfam (PF01929)		Thermochaetoides thermophila DSM 1495
19S
(LN)		Ribosomal protein L15polymer20324307.31UniProt (G0RZ88)
Pfam (PF00827)		Thermochaetoides thermophila DSM 1495
20T
(LO)		60S ribosomal protein L16-like proteinpolymer20422888.01UniProt (G0SH61)
Pfam (PF00572)		Thermochaetoides thermophila DSM 1495
21U
(LP)		60S ribosomal protein l17-like proteinpolymer18721072.21UniProt (G0SGY1)
Pfam (PF00237)		Thermochaetoides thermophila DSM 1495
22V
(LQ)		Ribosomal protein L18-like proteinpolymer21324195.51UniProt (G0S9B5)
Pfam (PF17135)		Thermochaetoides thermophila DSM 1495
23W
(LR)		Ribosomal protein L19polymer19222409.21UniProt (G0S9T3)
Pfam (PF01280)
Pfam (PF25476)		Thermochaetoides thermophila DSM 1495
24X
(LS)		60S ribosomal protein L20polymer17420341.91UniProt (G0SCE2)
Pfam (PF01775)		Thermochaetoides thermophila DSM 1495
25Y
(LT)		60S ribosomal protein l21-like proteinpolymer16018159.21UniProt (G0S0Z3)
Pfam (PF01157)		Thermochaetoides thermophila DSM 1495
26Z
(LU)		60S ribosomal protein L22-like proteinpolymer12714302.61UniProt (G0SDS8)
Pfam (PF01776)		Thermochaetoides thermophila DSM 1495
27AA
(LV)		60S ribosomal protein l23-like proteinpolymer13914674.41UniProt (G0SI44)
Pfam (PF00238)		Thermochaetoides thermophila DSM 1495
28BA
(LX)		60S ribosomal protein L25-like proteinpolymer15617175.31UniProt (G0S507)
Pfam (PF03939)
Pfam (PF00276)		Thermochaetoides thermophila DSM 1495
29CA
(LY)		60S ribosomal protein L26-like proteinpolymer13815565.31UniProt (G0RYN9)
Pfam (PF16906)
Pfam (PF00467)		Thermochaetoides thermophila DSM 1495
30DA
(LZ)		60S ribosomal protein L27polymer13515803.71UniProt (G0RZE9)
Pfam (PF01777)		Thermochaetoides thermophila DSM 1495
31EA
(La)		60S ribosomal protein L28-like proteinpolymer14916848.51Thermochaetoides thermophila DSM 1495
32FA
(Lb)		60S ribosomal protein L29polymer657529.71UniProt (Q2H9W4)
Pfam (PF01779)		Thermochaetoides thermophila DSM 1495Ribosomal protein eL29
33GA
(Lc)		60S ribosomal protein l30-like proteinpolymer10811602.61UniProt (G0SEI0)
Pfam (PF01248)		Thermochaetoides thermophila DSM 1495
34HA
(Ld)		Putative 60S ribosomal proteinpolymer12013872.21UniProt (G0SD68)
Pfam (PF01198)		Thermochaetoides thermophila DSM 1495
35IA
(Le)		60S ribosomal protein L32-like proteinpolymer13115096.01UniProt (G0S6V4)
Pfam (PF01655)		Thermochaetoides thermophila DSM 1495
36JA
(Lf)		60S ribosomal protein l33-like proteinpolymer10912330.31UniProt (G0SCL3)
Pfam (PF01247)		Thermochaetoides thermophila DSM 1495
37KA
(Lg)		Ribosomal protein l34-like proteinpolymer11913493.01UniProt (G0SFN0)
Pfam (PF01199)		Thermochaetoides thermophila DSM 1495
38LA
(Lh)		Dolichyl-diphosphooligosaccharide--protein glycotransferasepolymer12614643.41UniProt (G0S0D7)
Pfam (PF00831)		Thermochaetoides thermophila DSM 1495
39MA
(Li)		60S ribosomal protein L36polymer11012784.11UniProt (G0SBN1)
Pfam (PF01158)		Thermochaetoides thermophila DSM 1495
40NA
(Lj)		Ribosomal protein L37polymer9510660.51UniProt (G0S101)
Pfam (PF01907)		Thermochaetoides thermophila DSM 1495
41OA
(Lk)		60S ribosomal protein L38-like proteinpolymer819537.31Thermochaetoides thermophila DSM 1495
42PA
(Ll)		Ribosomal protein eL39polymer516297.51UniProt (Q2H9R2)
Pfam (PF00832)		Thermochaetoides thermophila DSM 1495
43QA
(Lm)		Putative ribosomal proteinpolymer12814609.21Thermochaetoides thermophila DSM 1495
44RA
(Ln)		60S ribosomal protein L41-Apolymer253354.21UniProt (P0CX86)
Pfam (PF05162)		Thermochaetoides thermophila DSM 1495Ribosomal protein eL41
45SA
(Lo)		60S ribosomal protein L44-like proteinpolymer10612045.51UniProt (G0SBZ6)
Pfam (PF00935)		Thermochaetoides thermophila DSM 1495
46TA
(Lp)		60S ribosomal protein L43-like proteinpolymer9210159.01UniProt (G0S6B0)
Pfam (PF01780)		Thermochaetoides thermophila DSM 1495
47UA
(Lq)		Putative 60S ribosomal proteinpolymer14715960.51UniProt (G0SHJ6)
Pfam (PF01778)		Thermochaetoides thermophila DSM 1495
48VA
(L1)		26S rRNApolymer33371078730.11Thermochaetoides thermophila DSM 1495
49WA
(L2)		5.8S rRNApolymer15650147.71GenBank (XR_002966750.1)Thermochaetoides thermophila DSM 1495
50XA
(L3)		5S rRNApolymer12038596.91GenBank (7OLC_3)Thermochaetoides thermophila DSM 1495
51AB, AC, AD, AE, AF...
(LN, L1, L2, LQ, Lb...)		MAGNESIUM IONnon-polymer24.3379Chemie (MG)
Sequence modifications
4: -7 - 447 (UniProt: G0S5M5)
PDBExternal DatabaseDetails
Asp 53-insertion
Tyr 54-insertion
Lys 55-insertion
Asp 56-insertion
Asp 57-insertion
Asp 58-insertion
Asp 59-insertion
Lys 60-insertion
6: 1 - 191 (UniProt: G0RYQ7)
PDBExternal DatabaseDetails
Gly 192-expression tag
Ser 193-expression tag
Gly 194-expression tag
Ser 195-expression tag
Ala 196-expression tag
Trp 197-expression tag
Ser 198-expression tag
His 199-expression tag
Pro 200-expression tag
Gln 201-expression tag
Phe 202-expression tag
Glu 203-expression tag
Lys 204-expression tag
Gly 205-expression tag
Gly 206-expression tag
Gly 207-expression tag
Ser 208-expression tag
Gly 209-expression tag
Gly 210-expression tag
Gly 211-expression tag
Ser 212-expression tag
Gly 213-expression tag
Gly 214-expression tag
Ser 215-expression tag
Ala 216-expression tag
Trp 217-expression tag
Ser 218-expression tag
His 219-expression tag
Pro 220-expression tag
Gln 221-expression tag
Phe 222-expression tag
Glu 223-expression tag
Lys 224-expression tag
LH: 1 - 229 (UniProt: G0S0E5)
PDBExternal DatabaseDetails
-Gly 16deletion
-Thr 17deletion
-Phe 18deletion
-Arg 19deletion
-Lys 20deletion
-Phe 21deletion
-Arg 22deletion
-Arg 23deletion
-Asn 24deletion
-Asp 25deletion
-Tyr 26deletion
-Thr 27deletion
-Phe 28deletion
-Gly 29deletion
-Arg 30deletion
-Thr 31deletion
-Arg 32deletion
-Gly 33deletion
-Arg 34deletion
-Glu 35deletion
-Lys 36deletion
-Lys 37deletion
-Arg 38deletion
-Gly 39deletion
-Thr 40deletion
-Thr 41deletion
-Ser 42deletion
-Ser 43deletion
-Lys 44deletion
-Ile 45deletion
-Gly 46deletion
-Glu 47deletion
-Leu 48deletion
-Asp 49deletion
-Ile 50deletion
-Asn 51deletion
-Gly 52deletion
LO: 2 - 204 (UniProt: G0SH61)
PDBExternal DatabaseDetails
Ace 2-acetylation
L3: 1 - 120 (GenBank: 7OLC_3)
PDBExternal DatabaseDetails
A 1N 1conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains50
Total formula weight2112243.3
Non-Polymers*Number of molecules379
Total formula weight9211.6
All*Total formula weight2121454.9
*Water molecules are not included.

249697

PDB entries from 2026-02-25

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