Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9I78

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
1	0005789	cellular_component	endoplasmic reticulum membrane
1	0015031	biological_process	protein transport
1	0016020	cellular_component	membrane
1	0045184	biological_process	establishment of protein localization
2	0005784	cellular_component	Sec61 translocon complex
2	0006886	biological_process	intracellular protein transport
3	0005789	cellular_component	endoplasmic reticulum membrane
3	0006605	biological_process	protein targeting
3	0006886	biological_process	intracellular protein transport
3	0008320	molecular_function	transmembrane protein transporter activity
3	0015031	biological_process	protein transport
3	0016020	cellular_component	membrane
3	0071806	biological_process	protein transmembrane transport
4	0005509	molecular_function	calcium ion binding
4	0005783	cellular_component	endoplasmic reticulum
4	0032469	biological_process	endoplasmic reticulum calcium ion homeostasis
6	0005739	cellular_component	mitochondrion
6	0005783	cellular_component	endoplasmic reticulum
6	0045047	biological_process	protein targeting to ER
7	0005789	cellular_component	endoplasmic reticulum membrane
La	0003735	molecular_function	structural constituent of ribosome
La	0005840	cellular_component	ribosome
La	0006412	biological_process	translation
La	0015934	cellular_component	large ribosomal subunit
LA	0002181	biological_process	cytoplasmic translation
LA	0003723	molecular_function	RNA binding
LA	0003735	molecular_function	structural constituent of ribosome
LA	0005840	cellular_component	ribosome
LA	0006412	biological_process	translation
LA	0022625	cellular_component	cytosolic large ribosomal subunit
Lb	0002181	biological_process	cytoplasmic translation
Lb	0003735	molecular_function	structural constituent of ribosome
Lb	0005840	cellular_component	ribosome
Lb	0006412	biological_process	translation
Lb	0022625	cellular_component	cytosolic large ribosomal subunit
LB	0003723	molecular_function	RNA binding
LB	0003735	molecular_function	structural constituent of ribosome
LB	0005840	cellular_component	ribosome
LB	0006412	biological_process	translation
LB	0022625	cellular_component	cytosolic large ribosomal subunit
Lc	0003723	molecular_function	RNA binding
Lc	0003735	molecular_function	structural constituent of ribosome
Lc	0022625	cellular_component	cytosolic large ribosomal subunit
LC	0003735	molecular_function	structural constituent of ribosome
LC	0005840	cellular_component	ribosome
LC	0006412	biological_process	translation
Ld	0002181	biological_process	cytoplasmic translation
Ld	0003735	molecular_function	structural constituent of ribosome
Ld	0005840	cellular_component	ribosome
Ld	0006412	biological_process	translation
Ld	0022625	cellular_component	cytosolic large ribosomal subunit
LD	0000027	biological_process	ribosomal large subunit assembly
LD	0003735	molecular_function	structural constituent of ribosome
LD	0005737	cellular_component	cytoplasm
LD	0005840	cellular_component	ribosome
LD	0006412	biological_process	translation
LD	0008097	molecular_function	5S rRNA binding
LD	0022625	cellular_component	cytosolic large ribosomal subunit
LD	0022626	cellular_component	cytosolic ribosome
Le	0003735	molecular_function	structural constituent of ribosome
Le	0005840	cellular_component	ribosome
Le	0006412	biological_process	translation
Le	0022625	cellular_component	cytosolic large ribosomal subunit
LE	0000027	biological_process	ribosomal large subunit assembly
LE	0002181	biological_process	cytoplasmic translation
LE	0003723	molecular_function	RNA binding
LE	0003735	molecular_function	structural constituent of ribosome
LE	0005840	cellular_component	ribosome
LE	0006412	biological_process	translation
LE	0022625	cellular_component	cytosolic large ribosomal subunit
Lf	0003735	molecular_function	structural constituent of ribosome
Lf	0005840	cellular_component	ribosome
Lf	0006412	biological_process	translation
LF	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LF	0003723	molecular_function	RNA binding
LF	0003735	molecular_function	structural constituent of ribosome
LF	0022625	cellular_component	cytosolic large ribosomal subunit
Lg	0003735	molecular_function	structural constituent of ribosome
Lg	0005840	cellular_component	ribosome
Lg	0006412	biological_process	translation
LG	0003723	molecular_function	RNA binding
LG	0022625	cellular_component	cytosolic large ribosomal subunit
LG	0042254	biological_process	ribosome biogenesis
LG	1990904	cellular_component	ribonucleoprotein complex
Lh	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Lh	0003735	molecular_function	structural constituent of ribosome
Lh	0005840	cellular_component	ribosome
Lh	0006412	biological_process	translation
Lh	0022625	cellular_component	cytosolic large ribosomal subunit
LH	0003735	molecular_function	structural constituent of ribosome
LH	0005840	cellular_component	ribosome
LH	0006412	biological_process	translation
LH	0019843	molecular_function	rRNA binding
Li	0003735	molecular_function	structural constituent of ribosome
Li	0005840	cellular_component	ribosome
Li	0006412	biological_process	translation
Li	1990904	cellular_component	ribonucleoprotein complex
LI	0003735	molecular_function	structural constituent of ribosome
LI	0005840	cellular_component	ribosome
LI	0006412	biological_process	translation
Lj	0003723	molecular_function	RNA binding
Lj	0003735	molecular_function	structural constituent of ribosome
Lj	0005840	cellular_component	ribosome
Lj	0006412	biological_process	translation
Lj	0022625	cellular_component	cytosolic large ribosomal subunit
Lj	0030684	cellular_component	preribosome
LJ	0003735	molecular_function	structural constituent of ribosome
LJ	0005840	cellular_component	ribosome
LJ	0006412	biological_process	translation
Lk	0003735	molecular_function	structural constituent of ribosome
Lk	0005840	cellular_component	ribosome
Lk	0006412	biological_process	translation
Ll	0003735	molecular_function	structural constituent of ribosome
Ll	0005840	cellular_component	ribosome
Ll	0006412	biological_process	translation
Ll	0022625	cellular_component	cytosolic large ribosomal subunit
Ll	0030684	cellular_component	preribosome
LL	0003723	molecular_function	RNA binding
LL	0003735	molecular_function	structural constituent of ribosome
LL	0005840	cellular_component	ribosome
LL	0006412	biological_process	translation
LL	0022625	cellular_component	cytosolic large ribosomal subunit
Lm	0003735	molecular_function	structural constituent of ribosome
Lm	0005840	cellular_component	ribosome
Lm	0006412	biological_process	translation
LM	0003723	molecular_function	RNA binding
LM	0003735	molecular_function	structural constituent of ribosome
LM	0005840	cellular_component	ribosome
LM	0006412	biological_process	translation
LM	0022625	cellular_component	cytosolic large ribosomal subunit
LM	0042273	biological_process	ribosomal large subunit biogenesis
Ln	0002181	biological_process	cytoplasmic translation
Ln	0003735	molecular_function	structural constituent of ribosome
Ln	0005737	cellular_component	cytoplasm
Ln	0005829	cellular_component	cytosol
Ln	0005840	cellular_component	ribosome
Ln	0006412	biological_process	translation
Ln	0022625	cellular_component	cytosolic large ribosomal subunit
LN	0002181	biological_process	cytoplasmic translation
LN	0003723	molecular_function	RNA binding
LN	0003735	molecular_function	structural constituent of ribosome
LN	0005840	cellular_component	ribosome
LN	0006412	biological_process	translation
LN	0022625	cellular_component	cytosolic large ribosomal subunit
Lo	0003735	molecular_function	structural constituent of ribosome
Lo	0005840	cellular_component	ribosome
Lo	0006412	biological_process	translation
LO	0003729	molecular_function	mRNA binding
LO	0003735	molecular_function	structural constituent of ribosome
LO	0005840	cellular_component	ribosome
LO	0006412	biological_process	translation
LO	0015934	cellular_component	large ribosomal subunit
LO	0017148	biological_process	negative regulation of translation
LO	0022625	cellular_component	cytosolic large ribosomal subunit
LO	1990904	cellular_component	ribonucleoprotein complex
Lp	0003735	molecular_function	structural constituent of ribosome
Lp	0005840	cellular_component	ribosome
Lp	0006412	biological_process	translation
LP	0002181	biological_process	cytoplasmic translation
LP	0003735	molecular_function	structural constituent of ribosome
LP	0005840	cellular_component	ribosome
LP	0006412	biological_process	translation
LP	0015934	cellular_component	large ribosomal subunit
LP	0022625	cellular_component	cytosolic large ribosomal subunit
Lq	0003735	molecular_function	structural constituent of ribosome
Lq	0005840	cellular_component	ribosome
Lq	0006412	biological_process	translation
LQ	0003723	molecular_function	RNA binding
LQ	0003735	molecular_function	structural constituent of ribosome
LQ	0005840	cellular_component	ribosome
LQ	0006412	biological_process	translation
LQ	0022625	cellular_component	cytosolic large ribosomal subunit
LQ	1990904	cellular_component	ribonucleoprotein complex
LR	0003723	molecular_function	RNA binding
LR	0003735	molecular_function	structural constituent of ribosome
LR	0005840	cellular_component	ribosome
LR	0006412	biological_process	translation
LR	0022625	cellular_component	cytosolic large ribosomal subunit
LS	0003735	molecular_function	structural constituent of ribosome
LS	0005840	cellular_component	ribosome
LS	0006412	biological_process	translation
LT	0003735	molecular_function	structural constituent of ribosome
LT	0005840	cellular_component	ribosome
LT	0006412	biological_process	translation
LT	1990904	cellular_component	ribonucleoprotein complex
LU	0002181	biological_process	cytoplasmic translation
LU	0003723	molecular_function	RNA binding
LU	0003735	molecular_function	structural constituent of ribosome
LU	0005737	cellular_component	cytoplasm
LU	0005840	cellular_component	ribosome
LU	0006412	biological_process	translation
LV	0003735	molecular_function	structural constituent of ribosome
LV	0005840	cellular_component	ribosome
LV	0006412	biological_process	translation
LV	0022625	cellular_component	cytosolic large ribosomal subunit
LV	0070180	molecular_function	large ribosomal subunit rRNA binding
LX	0003735	molecular_function	structural constituent of ribosome
LX	0005840	cellular_component	ribosome
LX	0006412	biological_process	translation
LY	0003723	molecular_function	RNA binding
LY	0003735	molecular_function	structural constituent of ribosome
LY	0006412	biological_process	translation
LY	0015934	cellular_component	large ribosomal subunit
LZ	0003735	molecular_function	structural constituent of ribosome
LZ	0005840	cellular_component	ribosome
LZ	0006412	biological_process	translation
LZ	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AVIVrqakpwkrf.DGvflyFedNagVI

Chain	Residue	Details
LV	ALA78-ILE104

site_id	PS00299
Number of Residues	26
Details	UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD

Chain	Residue	Details
Lm	LYS27-ASP52

site_id	PS00358
Number of Residues	17
Details	RIBOSOMAL_L5 Ribosomal protein L5 signature. LeqLSGQtpVySkARyT

Chain	Residue	Details
LJ	LEU38-THR54

site_id	PS00445
Number of Residues	22
Details	FGGY_KINASES_2 FGGY family of carbohydrate kinases signature 2. SaVSGLvyymspplNFKEALLD

Chain	Residue	Details
1	SER336-ASP357

site_id	PS00464
Number of Residues	25
Details	RIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinpymsnpCHIELiL

Chain	Residue	Details
LP	ARG126-LEU150

site_id	PS00467
Number of Residues	12
Details	RIBOSOMAL_L2 Ribosomal protein L2 signature. PktRGVAmNPvD

Chain	Residue	Details
LA	PRO197-ASP208

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FekdemiDviAvTkGHGfvGvtaR

Chain	Residue	Details
LB	PHE210-ARG233

site_id	PS00475
Number of Residues	32
Details	RIBOSOMAL_L15 Ribosomal protein L15 signature. KLLGkGrLpeip.VvVraryVSaeAerkVkeaG

Chain	Residue	Details
La	LYS111-GLY142

site_id	PS00526
Number of Residues	20
Details	RIBOSOMAL_L19E Ribosomal protein L19e signature. QKRLaAsvlgCGegkVWLDP

Chain	Residue	Details
LR	GLN7-PRO26

site_id	PS00700
Number of Residues	22
Details	RIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QickVrnKdiRkFlDGIYVseK

Chain	Residue	Details
LH	GLN202-LYS223

site_id	PS00709
Number of Residues	25
Details	RIBOSOMAL_L30E_1 Ribosomal protein L30e signature 1. SgkvvlGyRstLKalRsGkaKlILI

Chain	Residue	Details
Lc	SER23-ILE47

site_id	PS00755
Number of Residues	20
Details	SECY_1 Protein secY signature 1. TLMeLGItPIIsSGMVFQLL

Chain	Residue	Details
1	THR76-LEU95

site_id	PS00756
Number of Residues	19
Details	SECY_2 Protein secY signature 2. LLdElLQkgyGLGSGiSLF

Chain	Residue	Details
1	LEU166-PHE184

site_id	PS00783
Number of Residues	24
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. VRGMIPhktarGAaalerLkVFeG

Chain	Residue	Details
LO	VAL86-GLY109

site_id	PS00939
Number of Residues	27
Details	RIBOSOMAL_L1E Ribosomal protein L1e signature. NqgqKrfATaSALaASAvapllmaRGH

Chain	Residue	Details
LC	ASN115-HIS141

site_id	PS00993
Number of Residues	21
Details	RIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. ELGTacGKlfrcstMaIlDaG

Chain	Residue	Details
Lc	GLU79-GLY99

site_id	PS01067
Number of Residues	29
Details	SECE_SEC61G Protein secE/sec61-gamma signature. FlKDgIqfInRaqKPdrrEfikisQAVGV

Chain	Residue	Details
3	PHE15-VAL43

site_id	PS01077
Number of Residues	20
Details	RIBOSOMAL_L37E Ribosomal protein L37e signature. GTsSfGkRhnkt.HglCrRCG

Chain	Residue	Details
Lj	GLY4-GLY23

site_id	PS01082
Number of Residues	18
Details	RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CrkmgIPYaiIkGKarLG

Chain	Residue	Details
LG	CYS173-GLY190

site_id	PS01104
Number of Residues	15
Details	RIBOSOMAL_L13E Ribosomal protein L13e signature. RlGRGFTLeELkaaG

Chain	Residue	Details
LL	ARG70-GLY84

site_id	PS01105
Number of Residues	22
Details	RIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKItRpHGnsGvVrAkFthpLP

Chain	Residue	Details
Lf	GLY71-PRO92

site_id	PS01106
Number of Residues	18
Details	RIBOSOMAL_L18E Ribosomal protein L18e signature. RrLfmSRinRPpVSLsRI

Chain	Residue	Details
LQ	ARG78-ILE95

site_id	PS01107
Number of Residues	12
Details	RIBOSOMAL_L27E Ribosomal protein L27e signature. GKNrWFFtpLRF

Chain	Residue	Details
LZ	GLY124-PHE135

site_id	PS01144
Number of Residues	15
Details	RIBOSOMAL_L31E Ribosomal protein L31e signature. VRLDpqLNkKvWeQG

Chain	Residue	Details
Ld	VAL57-GLY71

site_id	PS01145
Number of Residues	14
Details	RIBOSOMAL_L34E Ribosomal protein L34e signature. TtSnRtrviKTPGG

Chain	Residue	Details
Lg	THR16-GLY29

site_id	PS01170
Number of Residues	19
Details	RIBOSOMAL_L6E Ribosomal protein L6e signature. NgvPLRRvnarYVIATSv.K

Chain	Residue	Details
LE	ASN90-LYS108

site_id	PS01171
Number of Residues	26
Details	RIBOSOMAL_L21E Ribosomal protein L21e signature. GDiVdikvngavqk.GmpHkfYhGkTG

Chain	Residue	Details
LT	GLY37-GLY62

site_id	PS01172
Number of Residues	12
Details	RIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKivLRleC

Chain	Residue	Details
Lo	LYS63-CYS74

site_id	PS01190
Number of Residues	11
Details	RIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRvIELLR

Chain	Residue	Details
Li	PRO61-ARG71

site_id	PS01194
Number of Residues	24
Details	RIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGYVIYRvRVrRG

Chain	Residue	Details
LN	ASP46-GLY69

site_id	PS01257
Number of Residues	22
Details	RIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqtGMRgAFGKPqGtvARV

Chain	Residue	Details
LI	ALA108-VAL129

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)