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9I5X

Porphyromonas gingivalis 70S ribosome (W83 Strain)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(p)
Small ribosomal subunit protein uS19polymer899929.71UniProt (B2RLY8)
Pfam (PF00203)
UniProt (by SIFTS) (Q7MTL7)
Porphyromonas gingivalis30S ribosomal protein S19
2B
(0)
Large ribosomal subunit protein bL28polymer799027.81UniProt (B2RM15)
Pfam (PF00830)
UniProt (by SIFTS) (Q7MTJ4)
Porphyromonas gingivalis50S ribosomal protein L28
3C
(1)
Large ribosomal subunit protein uL29polymer647499.81UniProt (B2RLY4)
Pfam (PF00831)
UniProt (by SIFTS) (Q7MTM1)
Porphyromonas gingivalis50S ribosomal protein L29
4D
(2)
Large ribosomal subunit protein uL30polymer586700.11UniProt (B2RLX4)
Pfam (PF00327)
UniProt (by SIFTS) (Q7MTN1)
Porphyromonas gingivalis50S ribosomal protein L30
5E
(4)
Large ribosomal subunit protein bL32polymer616958.21UniProt (B2RH62)
Pfam (PF01783)
UniProt (by SIFTS) (Q7MT50)
Porphyromonas gingivalis50S ribosomal protein L32
6F
(5)
Large ribosomal subunit protein bL33polymer627356.81UniProt (B2RM14)
Pfam (PF00471)
UniProt (by SIFTS) (Q7MTJ5)
Porphyromonas gingivalis50S ribosomal protein L33
7G
(6)
Large ribosomal subunit protein bL34polymer505761.71UniProt (B2RIL8)
Pfam (PF00468)
UniProt (by SIFTS) (Q7MWG1)
Porphyromonas gingivalis50S ribosomal protein L34
8H
(7)
Large ribosomal subunit protein bL35polymer657518.11UniProt (B2RJD8)
Pfam (PF01632)
UniProt (by SIFTS) (Q7MVQ7)
Porphyromonas gingivalis50S ribosomal protein L35
9I
(8)
Large ribosomal subunit protein bL36polymer384601.61UniProt (B2RLW9)
Pfam (PF00444)
UniProt (by SIFTS) (Q7MTN6)
Porphyromonas gingivalis50S ribosomal protein L36
10J
(A)
23S rRNApolymer2889936413.11Porphyromonas gingivalis
11K
(B)
5S rRNApolymer10935186.91Porphyromonas gingivalis
12L
(D)
Large ribosomal subunit protein uL2polymer27429778.61UniProt (B2RLY9)
Pfam (PF03947)
Pfam (PF00181)
UniProt (by SIFTS) (Q7MTL6)
Porphyromonas gingivalis50S ribosomal protein L2
13M
(E)
Large ribosomal subunit protein uL3polymer20521925.51UniProt (B2RLZ2)
Pfam (PF00297)
UniProt (by SIFTS) (Q7MTL3)
Porphyromonas gingivalis50S ribosomal protein L3
14N
(F)
Large ribosomal subunit protein uL4polymer20923247.91UniProt (Q7MTL4)
Pfam (PF00573)
Porphyromonas gingivalis50S ribosomal protein L4
15O
(K)
Small ribosomal subunit protein uS10polymer10111468.61UniProt (B2RLZ3)
Pfam (PF00338)
UniProt (by SIFTS) (Q7MTL2)
Porphyromonas gingivalis30S ribosomal protein S10
16P
(L)
Small ribosomal subunit protein uS11polymer12813857.21UniProt (B2RLW7)
Pfam (PF00411)
UniProt (by SIFTS) (Q7MTN8)
Porphyromonas gingivalis30S ribosomal protein S11
17Q
(M)
Large ribosomal subunit protein uL13polymer15117075.81UniProt (Q7MX43)
Pfam (PF00572)
Porphyromonas gingivalis
18R
(N)
Large ribosomal subunit protein uL14polymer12113086.31UniProt (B2RLY2)
Pfam (PF00238)
UniProt (by SIFTS) (Q7MTM3)
Porphyromonas gingivalis50S ribosomal protein L14
19S
(O)
Large ribosomal subunit protein uL15polymer14815616.11UniProt (Q7MTN2)
Pfam (PF00828)
Porphyromonas gingivalis50S ribosomal protein L15
20T
(P)
Large ribosomal subunit protein uL16polymer14416344.11UniProt (B2RLY5)
Pfam (PF00252)
UniProt (by SIFTS) (Q7MTM0)
Porphyromonas gingivalis50S ribosomal protein L16
21U
(Q)
Large ribosomal subunit protein bL17polymer16018074.11UniProt (B2RLW4)
Pfam (PF01196)
UniProt (by SIFTS) (Q7MTP1)
Porphyromonas gingivalis50S ribosomal protein L17
22V
(R)
Large ribosomal subunit protein uL18polymer11412560.61UniProt (Q7MTM9)
Pfam (PF00861)
Porphyromonas gingivalis50S ribosomal protein L18
23W
(S)
Large ribosomal subunit protein bL19polymer12114120.51UniProt (B2RGQ9)
Pfam (PF01245)
UniProt (by SIFTS) (Q7MXW3)
Porphyromonas gingivalis50S ribosomal protein L19
24X
(T)
Large ribosomal subunit protein bL20polymer11513324.71UniProt (Q7MVQ8)
Pfam (PF00453)
Porphyromonas gingivalis50S ribosomal protein L20
25Y
(U)
Large ribosomal subunit protein bL21polymer10511843.91UniProt (Q7MX95)
Pfam (PF00829)
Porphyromonas gingivalis50S ribosomal protein L21
26Z
(V)
Large ribosomal subunit protein uL22polymer13415357.81UniProt (B2RLY7)
Pfam (PF00237)
UniProt (by SIFTS) (Q7MTL8)
Porphyromonas gingivalis50S ribosomal protein L22
27AA
(W)
Large ribosomal subunit protein uL23polymer9711116.11UniProt (A0A134DR82)
Pfam (PF00276)
UniProt (by SIFTS) (Q7MTL5)
Porphyromonas gingivalis
28BA
(X)
Large ribosomal subunit protein uL24polymer10611627.71UniProt (B2RLY1)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (Q7MTM4)
Porphyromonas gingivalis50S ribosomal protein L24
29CA
(Z)
Large ribosomal subunit protein bL27polymer859244.61UniProt (B2RLC1)
Pfam (PF01016)
UniProt (by SIFTS) (Q7MX94)
Porphyromonas gingivalis50S ribosomal protein L27
30DA
(a)
16S rRNApolymer1534496728.21Porphyromonas gingivalis
31EA
(b)
Small ribosomal subunit protein bS6polymer11713613.61UniProt (B2RIG3)
Pfam (PF01250)
UniProt (by SIFTS) (Q7MWL3)
Porphyromonas gingivalis30S ribosomal protein S6
32FA
(c)
Small ribosomal subunit protein bS16polymer19220703.51UniProt (Q7MT66)
Pfam (PF00886)
Porphyromonas gingivalis30S ribosomal protein S16
33GA
(d)
Small ribosomal subunit protein bS20polymer849711.41UniProt (B2RHR8)
Pfam (PF01649)
UniProt (by SIFTS) (Q7MU43)
Porphyromonas gingivalis30S ribosomal protein S20
34HA
(e)
Small ribosomal subunit protein uS17polymer8410020.81UniProt (B2RLY3)
Pfam (PF00366)
UniProt (by SIFTS) (Q7MTM2)
Porphyromonas gingivalis30S ribosomal protein S17
35IA
(f)
Small ribosomal subunit protein uS15polymer8910584.51UniProt (B2RLH2)
Pfam (PF00312)
UniProt (by SIFTS) (Q7MU16)
Porphyromonas gingivalis30S ribosomal protein S15
36JA
(g)
Small ribosomal subunit protein uS14polymer899970.91UniProt (B2RLX9)
Pfam (PF00253)
UniProt (by SIFTS) (Q7MTM6)
Porphyromonas gingivalis30S ribosomal protein S14
37KA
(h)
Large ribosomal subunit protein bL9polymer17919356.21UniProt (B2RIG5)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (Q7MWL1)
Porphyromonas gingivalis50S ribosomal protein L9
38LA
(i)
Small ribosomal subunit protein uS13polymer12614023.41UniProt (B2RLW8)
Pfam (PF00416)
UniProt (by SIFTS) (Q7MTN7)
Porphyromonas gingivalis30S ribosomal protein S13
39MA
(j)
Small ribosomal subunit protein uS12polymer13414802.21UniProt (Q7MTK9)
Pfam (PF00164)
Porphyromonas gingivalis30S ribosomal protein S12
40NA
(k)
Small ribosomal subunit protein uS3polymer24627620.21UniProt (B2RLY6)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (Q7MTL9)
Porphyromonas gingivalis30S ribosomal protein S3
41OA
(l)
Small ribosomal subunit protein uS4polymer20122969.41UniProt (B2RLW6)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (Q7MTN9)
Porphyromonas gingivalis30S ribosomal protein S4
42PA
(m)
Small ribosomal subunit protein uS7polymer15818134.11UniProt (Q7MTL0)
Pfam (PF00177)
Porphyromonas gingivalis30S ribosomal protein S7
43QA
(n)
Small ribosomal subunit protein uS5polymer17217870.71UniProt (Q7MTN0)
Pfam (PF00333)
Pfam (PF03719)
Porphyromonas gingivalis30S ribosomal protein S5
44RA
(Y)
Large ribosomal subunit protein bL25polymer19221028.61UniProt (B2RHF3)
Pfam (PF01386)
Pfam (PF14693)
UniProt (by SIFTS) (Q7MXK8)
Porphyromonas gingivalis50S ribosomal protein L25,General stress protein CTC
45SA
(o)
Small ribosomal subunit protein uS8polymer13114823.51UniProt (B2RLX8)
Pfam (PF00410)
UniProt (by SIFTS) (Q7MTM7)
Porphyromonas gingivalis30S ribosomal protein S8
46TA
(10)
AURKAIP1/COX24 domain-containing proteinpolymer303827.91UniProt (Q7MV43)Porphyromonas gingivalis
47UA
(J)
Small ribosomal subunit protein uS9polymer12814556.11UniProt (B2RL63)
Pfam (PF00380)
UniProt (by SIFTS) (Q7MX42)
Porphyromonas gingivalis30S ribosomal protein S9
48VA
(I)
Small ribosomal subunit protein bS18polymer9010644.71UniProt (B2RIG4)
Pfam (PF01084)
UniProt (by SIFTS) (Q7MWL2)
Porphyromonas gingivalis30S ribosomal protein S18
49AD, AE, AF, AG, AH...
(A, F, T, V, 4...)
MAGNESIUM IONnon-polymer24.3128Chemie (MG)
50XA
(4)
ZINC IONnon-polymer65.41Chemie (ZN)
51AB, AC, BB, BC, CB...
(A, B, W, X, a)
POTASSIUM IONnon-polymer39.143Chemie (K)
52DC, EC, FC, FH, GC...
(A, B)
SODIUM IONnon-polymer23.014Chemie (NA)
53AI, BI, CI, DI, EI...
(4, A, B, D, E...)
waterwater18.0855Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains48
Total formula weight2087613.5
Non-Polymers*Number of molecules186
Total formula weight5179.5
All*Total formula weight2092793.0
*Water molecules are not included.

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PDB entries from 2026-01-21

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