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9I3V

Cryo-EM structure of the human LRP2 ectodomain

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Low-density lipoprotein receptor-related protein 2polymer4473502222.52UniProt (P98164)
Pfam (PF00057)
Pfam (PF00058)
Pfam (PF14670)
Pfam (PF07645)
Pfam (PF24468)
Pfam (PF12662)
Homo sapiens (human)LRP-2,Glycoprotein 330,gp330,Megalin
2C, F
(D, E)
Unidentified peptidepolymer10869.12Homo sapiens (human)
3D, E, J
(C, F, J)
Unidentified peptidepolymer7613.73Homo sapiens
4G
(H)
Unidentified peptidepolymer121039.31Homo sapiens
5H
(I)
Unidentified peptidepolymer8698.91Homo sapiens
6I
(G)
Unidentified peptidepolymer131124.41Homo sapiens
7K, N, O, P, Q...
(K, N, O, P, Q...)
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.57In PDB
GlyTouCan (G15407YE)
8L, M, R, S, T...
(L, M, R, S, T...)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.48In PDB
GlyTouCan (G42666HT)
9AA, AB, BA, BB, CA...
(A, B)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.219Chemie (NAG)
10JA, JB, KA, KB, LA...
(A, B)
2-acetamido-2-deoxy-beta-D-galactopyranosenon-polymer221.29Chemie (NGA)
11AC, BC, NA, OA, OB...
(B, A)
CALCIUM IONnon-polymer40.125Chemie (CA)
12UA, VB
(A, B)
NICKEL (II) IONnon-polymer58.72Chemie (NI)
Sequence modifications
A, B: 1 - 4423 (UniProt: P98164)
PDBExternal DatabaseDetails
Gly 4424-expression tag
Trp 4425-expression tag
Ser 4426-expression tag
His 4427-expression tag
Pro 4428-expression tag
Gln 4429-expression tag
Phe 4430-expression tag
Glu 4431-expression tag
Lys 4432-expression tag
Ala 4433-expression tag
Gly 4434-expression tag
Gly 4435-expression tag
Gly 4436-expression tag
Ser 4437-expression tag
Gly 4438-expression tag
Gly 4439-expression tag
Gly 4440-expression tag
Ser 4441-expression tag
Gly 4442-expression tag
Gly 4443-expression tag
Gly 4444-expression tag
Ser 4445-expression tag
Trp 4446-expression tag
Ser 4447-expression tag
His 4448-expression tag
Pro 4449-expression tag
Gln 4450-expression tag
Phe 4451-expression tag
Glu 4452-expression tag
Lys 4453-expression tag
Gly 4454-expression tag
Gly 4455-expression tag
Gly 4456-expression tag
Ser 4457-expression tag
Gly 4458-expression tag
Gly 4459-expression tag
Gly 4460-expression tag
Ser 4461-expression tag
Gly 4462-expression tag
Gly 4463-expression tag
Gly 4464-expression tag
Ser 4465-expression tag
Trp 4466-expression tag
Ser 4467-expression tag
His 4468-expression tag
Pro 4469-expression tag
Gln 4470-expression tag
Phe 4471-expression tag
Glu 4472-expression tag
Lys 4473-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight1010886.8
BranchedNumber of molecules15
Total formula weight7501.0
Non-Polymers*Number of molecules55
Total formula weight7313.2
All*Total formula weight1025701.0
*Water molecules are not included.

249697

PDB entries from 2026-02-25

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