Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9I05

Cryo-EM structure of the large subunit of the mitochondrial ribosome from Toxoplasma gondii

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(Aa)		Putative LSU ribosomal protein L2Ppolymer57862157.41UniProt (A0A7J6KET1)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (S8F793)		Toxoplasma gondii
2B
(Ab)		Large ribosomal subunit protein uL3mpolymer51456206.21UniProt (A0A2G8Y818)
Pfam (PF00297)
UniProt (by SIFTS) (A0A125YKW9)		Toxoplasma gondii
3C
(Ac)		Large ribosomal subunit protein uL4mpolymer80291060.91UniProt (A0A151HQQ9)
Pfam (PF00573)
UniProt (by SIFTS) (S8EX11)		Toxoplasma gondii
4D
(Ad)		HECT-domain (Ubiquitin-transferase) domain-containing proteinpolymer39243075.21UniProt (A0A7J6K7T4)
UniProt (by SIFTS) (S8GMU2)		Toxoplasma gondii
5E
(Ae)		Ribosomal protein L9, N-terminal domain-containing proteinpolymer49254036.11UniProt (A0A086JV44)
Pfam (PF01281)
UniProt (by SIFTS) (S8G4D4)		Toxoplasma gondii
6F
(Af)		Putative ribosomal protein L11polymer18020103.71UniProt (A0A7J6KEF6)
Pfam (PF00298)
Pfam (PF03946)
UniProt (by SIFTS) (A0A125YTN1)		Toxoplasma gondii
7G
(Ag)		Putative 50S ribosomal protein L13polymer23126050.61UniProt (A0A7J6K0U2)
Pfam (PF00572)
UniProt (by SIFTS) (A0A125YJY5)		Toxoplasma gondii
8H
(Ah)		Putative LSU ribosomal protein L14Ppolymer12213986.71UniProt (A0A7J6K196)
Pfam (PF00238)
UniProt (by SIFTS) (A0A125YQP1)		Toxoplasma gondii
9I
(Ai)		Ribosomal protein L15, putativepolymer63871016.51UniProt (S8GIU7)
Pfam (PF00828)		Toxoplasma gondii
10J
(Aj)		Putative 50S ribosomal protein L16polymer18721351.91UniProt (A0A7J6K7Z7)
Pfam (PF00252)
UniProt (by SIFTS) (A0A125YNI9)		Toxoplasma gondii
11K
(Ak)		Putative 50S ribosomal protein L17polymer24729333.51UniProt (A0A7J6KEY9)
Pfam (PF01196)
UniProt (by SIFTS) (A0A125YFY0)		Toxoplasma gondii
12L
(Al)		50S ribosomal protein L19, chloroplasticpolymer74484072.61UniProt (A0A7J6JZ22)
Pfam (PF01245)
UniProt (by SIFTS) (S8GBY9)		Toxoplasma gondii
13M
(Am)		Putative ribosomal protein L20polymer12114575.01UniProt (B9PY19)
Pfam (PF00453)
UniProt (by SIFTS) (A0A125YU12)		Toxoplasma gondii
14N
(An)		Large ribosomal subunit protein bL21mpolymer68177440.21UniProt (A0A7J6K7U7)
Pfam (PF00829)
UniProt (by SIFTS) (S8F9B8)		Toxoplasma gondii
15O
(Ao)		Ribosomal L22p/L17e proteinpolymer57364822.51UniProt (S8F1I2)Toxoplasma gondii
16P
(Ap)		Large ribosomal subunit protein uL23mpolymer25329217.01UniProt (A0A7J6K299)
Pfam (PF00276)
UniProt (by SIFTS) (A0A125YSK9)		Toxoplasma gondii
17Q
(Aq)		Large ribosomal subunit protein uL24cpolymer43848147.91UniProt (A0A7J6JXG2)
Pfam (PF17136)
UniProt (by SIFTS) (A0A125YTV4)		Toxoplasma gondii
18R
(Ar)		Ribosomal l25 family proteinpolymer73980776.71UniProt (S8ER88)Toxoplasma gondii
19S
(As)		bL27mpolymer39143964.81UniProt (S8GME4)Toxoplasma gondii
20T
(At)		Putative ribosomal protein L28polymer28233345.11UniProt (A0A7J6K129)
UniProt (by SIFTS) (A0A125YXA5)		Toxoplasma gondii
21U
(Au)		Large ribosomal subunit protein uL29mpolymer23628367.21UniProt (A0A7J6K1F8)
Pfam (PF06984)
UniProt (by SIFTS) (A0A125YVS8)		Toxoplasma gondii
22V
(Av)		bL32mpolymer8810625.41UniProt (A0A7J6K9L3)
UniProt (by SIFTS) (A0A125YQ85)		Toxoplasma gondii
23W
(Aw)		Putative 50S ribosomal protein L33polymer12615185.91UniProt (A0A7J6JWI3)
Pfam (PF00471)
UniProt (by SIFTS) (A0A125YRM7)		Toxoplasma gondii
24X
(Ax)		bL35mpolymer35239434.31UniProt (A0A7J6KEG8)
UniProt (by SIFTS) (A0A125YU18)		Toxoplasma gondii
25Y
(Ay)		bL36mpolymer20022554.11UniProt (A0A3R8AVZ6)
UniProt (by SIFTS) (S8GJM3)		Toxoplasma gondii
26Z
(Az)		mL40polymer29332801.51UniProt (A0A7J6KCG7)
UniProt (by SIFTS) (S8F2D4)		Toxoplasma gondii
27AA
(AA)		Putative 60S ribosomal protein L27polymer9710721.71UniProt (A0A7J6JYF7)
Pfam (PF09809)
UniProt (by SIFTS) (A0A125YTD0)		Toxoplasma gondii
28BA
(AB)		Large ribosomal subunit protein mL43polymer20323625.01UniProt (A0A7J6KC95)
UniProt (by SIFTS) (A0A125YVS1)		Toxoplasma gondii
29CA
(AC)		Ribosomal protein L46polymer59867516.81UniProt (A0A7J6JX23)
UniProt (by SIFTS) (S8EWD8)		Toxoplasma gondii
30DA
(AD)		Large ribosomal subunit protein mL49polymer31033466.11UniProt (A0A7J6JUD4)
Pfam (PF05046)
UniProt (by SIFTS) (A0A125YX92)		Toxoplasma gondii
31EA
(AE)		mL53polymer21724687.41UniProt (A0A7J6JX69)
UniProt (by SIFTS) (S8G1Y9)		Toxoplasma gondii
32FA
(AF)		Large ribosomal subunit protein mL54polymer51555962.81UniProt (S8F6A8)
Pfam (PF08561)		Toxoplasma gondii
33GA
(AG)		BIR proteinpolymer27132555.41UniProt (A0A7J6K0B0)
UniProt (by SIFTS) (S8GF62)		Toxoplasma gondii
34HA
(AH)		mL102polymer39643522.71UniProt (A0A0F7V869)Toxoplasma gondii
35IA
(AI)		RAP domain-containing proteinpolymer65673547.81UniProt (A0A7J6KFM0)
UniProt (by SIFTS) (S8GIP4)		Toxoplasma gondii
36JA
(Xa)		mL130polymer54459500.91UniProt (A0A7J6JZ23)
UniProt (by SIFTS) (S8G210)		Toxoplasma gondii
37KA
(Xb)		RRM domain-containing proteinpolymer66475105.71UniProt (S7UYV0)
UniProt (by SIFTS) (S8F7E5)		Toxoplasma gondii
38LA
(Xc)		mL132polymer19822764.51UniProt (A0A7J6JXX9)
UniProt (by SIFTS) (A0A125YYR6)		Toxoplasma gondii
39MA
(Xd)		RAP domain-containing proteinpolymer90398356.01UniProt (A0A2G8XP01)
UniProt (by SIFTS) (S8EQ41)		Toxoplasma gondii
40NA
(Xe)		Large ribosomal subunit protein uL24cpolymer22925957.51UniProt (A0A7J6K981)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (A0A125YMH9)		Toxoplasma gondii
41OA
(Xf)		FAS1 domain-containing proteinpolymer70676075.11UniProt (A0A7J6KB94)
UniProt (by SIFTS) (S8F814)		Toxoplasma gondii
42PA
(Xg)		DUF6832 domain-containing proteinpolymer48656097.61UniProt (A0A7J6KC93)
Pfam (PF20725)
Pfam (PF20724)
UniProt (by SIFTS) (A0A125YNS5)		Toxoplasma gondii
43QA
(Xh)		RAP domain-containing proteinpolymer63269902.41UniProt (A0A7J6KAP7)
UniProt (by SIFTS) (S8G8G0)		Toxoplasma gondii
44RA
(Xi)		RAP domain-containing proteinpolymer44551921.21UniProt (A0A7J6K2J1)
Pfam (PF08373)
UniProt (by SIFTS) (A0A125YNK1)		Toxoplasma gondii
45SA
(Xj)		RAP domain-containing proteinpolymer1012113716.01UniProt (A0A7J6K4L1)
UniProt (by SIFTS) (S8F6E9)		Toxoplasma gondii
46TA
(Xk)		RNA recognition motif-containing proteinpolymer24427595.21UniProt (A0A7J6KGH2)
Pfam (PF00076)
UniProt (by SIFTS) (A0A125YVN6)		Toxoplasma gondii
47DB, UA
(Xl, Xv)		RAP domain-containing proteinpolymer64572010.72UniProt (A0A7J6JZB1)
Pfam (PF26188)
UniProt (by SIFTS) (S8EW79)		Toxoplasma gondii
48VA
(Xm)		Macro domain-containing proteinpolymer63168141.31UniProt (A0A7J6K515)
Pfam (PF01661)
UniProt (by SIFTS) (S8GAV7)		Toxoplasma gondii
49WA
(Xn)		AP2 domain transcription factor AP2VIIb-2polymer56862047.91UniProt (A0A7J6K291)
UniProt (by SIFTS) (S8F1K6)		Toxoplasma gondii
50XA
(Xo)		mL144polymer953103327.31UniProt (by SIFTS) (S8F8W6)Toxoplasma gondii
51YA
(Xp)		Peptidyl-prolyl cis-trans isomerasepolymer28331893.21UniProt (A0A7J6K9Z8)
Pfam (PF00160)
UniProt (by SIFTS) (S8FB56)		Toxoplasma gondiiPPIase
52ZA
(Xq)		mL146polymer1112121147.41UniProt (A0A7J6K1X6)
UniProt (by SIFTS) (S8EU00)		Toxoplasma gondii
53AB
(Xr)		RAP domain-containing proteinpolymer71378688.71UniProt (A0A7J6KAD2)
Pfam (PF08373)
UniProt (by SIFTS) (S8FC14)		Toxoplasma gondii
54BB
(Xs)		mL149polymer49354289.31UniProt (A0A7J6JXX4)
UniProt (by SIFTS) (A0A125YRP8)		Toxoplasma gondii
55CB
(Xt)		mL148polymer12314034.31UniProt (A0A7J6JV70)
UniProt (by SIFTS) (A0A125YYH1)		Toxoplasma gondii
56EB
(Xw)		Transmembrane proteinpolymer32936669.41UniProt (A0A7J6KAS3)
UniProt (by SIFTS) (S8G7J3)		Toxoplasma gondii
57FB
(Xx)		mL152polymer30031789.51UniProt (A0A7J6K0Y0)
UniProt (by SIFTS) (S8EXG3)		Toxoplasma gondii
58GB
(Xy)		mL153polymer42448035.71UniProt (Q1JTA3)
UniProt (by SIFTS) (A0A125YKA8)		Toxoplasma gondii
59HB
(Xz)		AP2 domain transcription factor AP2IV-1polymer42547659.11UniProt (A0A7J6KEE5)
Pfam (PF00847)
UniProt (by SIFTS) (S8GSN6)		Toxoplasma gondii
60IB
(XA)		mL155polymer31034626.01UniProt (A0A7J6KDX2)
Pfam (PF23512)
UniProt (by SIFTS) (S8FAF6)		Toxoplasma gondii
61JB
(XB)		mL156polymer19822704.01UniProt (A0A7J6K9K6)
Pfam (PF23519)
UniProt (by SIFTS) (S8FBX6)		Toxoplasma gondii
62KB
(XC)		mL157polymer30534078.11UniProt (A0A7J6JWE1)
UniProt (by SIFTS) (S8G3R6)		Toxoplasma gondii
63LB
(XD)		mL158polymer23626651.71UniProt (S7UHA3)
UniProt (by SIFTS) (S8G7B2)		Toxoplasma gondii
64MB
(XE)		mL159polymer15017303.51UniProt (A0A7J6KA70)
UniProt (by SIFTS) (A0A125YZ59)		Toxoplasma gondii
65NB
(XF)		mL160polymer14116011.41UniProt (A0A7J6JZI4)
UniProt (by SIFTS) (A0A125YKH4)		Toxoplasma gondii
66OB
(XG)		mL161polymer47651870.01UniProt (A0A7J6K5D7)
UniProt (by SIFTS) (S8F1F9)		Toxoplasma gondii
67PB
(XH)		Ribosomal protein RPL22polymer34138201.11UniProt (A0A7J6JUA9)Toxoplasma gondii
68QB
(XI)		Transmembrane proteinpolymer20222653.01UniProt (A0A7J6K730)
UniProt (by SIFTS) (A0A125YKV7)		Toxoplasma gondii
69RB
(XJ)		Chain Uapolymer28030943.31Toxoplasma gondii
70SB
(Ua)		Ribosomal l25 family proteinpolymer262842.11UniProt (A0A7J6JXW0)
UniProt (by SIFTS) (S8ER88)		Toxoplasma gondii
71TB
(Ub)		Chain Ucpolymer212501.91Toxoplasma gondii
72UB
(Uc)		Chain Udpolymer191708.91Toxoplasma gondii
73VB
(Ud)		Chain Uepolymer283149.41Toxoplasma gondii
74WB
(Ue)		Chain Ufpolymer131462.71Toxoplasma gondii
75XB
(Uf)		LSU-1polymer6528.61Toxoplasma gondii
76YB
(RA)		LSU-2polymer3511145.61Toxoplasma gondii
77ZB
(RB)		LSU-3polymer278744.31Toxoplasma gondii
78AC
(RC)		LSU-4polymer3310680.51Toxoplasma gondii
79BC
(RD)		LSU-5polymer9129383.51Toxoplasma gondii
80CC
(RE)		LSU-6polymer4414103.51Toxoplasma gondii
81DC
(RF)		LSU-7polymer299490.71Toxoplasma gondii
82EC
(RG)		LSU-8polymer8426913.01Toxoplasma gondii
83FC
(RI)		LSU-9polymer3611693.01Toxoplasma gondii
84GC
(RJ)		LSU-10polymer5918880.31Toxoplasma gondii
85HC
(RK)		LSU-11polymer103239.01Toxoplasma gondii
86IC
(RL)		LSU-12polymer17857332.91Toxoplasma gondii
87JC
(RM)		LSU-13polymer7122879.71Toxoplasma gondii
88KC
(RN)		LSU-14polymer268289.01Toxoplasma gondii
89LC
(RO)		LSU-15polymer268406.11Toxoplasma gondii
90MC
(RP)		LSU-16polymer113656.31Toxoplasma gondii
91NC
(RQ)		LSU-17polymer6821973.21Toxoplasma gondii
92OC
(RS)		LSU-18polymer9430072.81Toxoplasma gondii
93PC
(RT)		LSU-19polymer289120.61Toxoplasma gondii
94QC
(RU)		LSU-20polymer154864.01Toxoplasma gondii
95RC
(RV)		LSU-21polymer3511298.91Toxoplasma gondii
96SC
(RW)		LSU-22polymer9129090.21Toxoplasma gondii
97TC
(RX)		LSU-23polymer27788940.31Toxoplasma gondii
98UC
(RY)		LSU-24polymer4715299.31Toxoplasma gondii
99VC
(RZ)		LSU-25polymer4514644.01Toxoplasma gondii
100WC
(Ra)		LSU-26polymer5016123.61Toxoplasma gondii
101XC
(Rb)		LSU-27polymer288935.31Toxoplasma gondii
102YC
(Rc)		LSU-28polymer20164666.31Toxoplasma gondii
103ZC
(Rd)		LSU-29polymer8025808.31Toxoplasma gondii
104AD
(Rf)		LSU-30polymer299449.81Toxoplasma gondii
105BD
(Rg)		LSU-31polymer144518.81Toxoplasma gondii
106CD
(Rh)		LSU-32polymer4915828.61Toxoplasma gondii
107DD
(Ri)		LSU-32polymer4414152.31Toxoplasma gondii
108ED
(Ay)		ZINC IONnon-polymer65.41Chemie (ZN)
109FD, GD
(Xw, XD)		FE2/S2 (INORGANIC) CLUSTERnon-polymer175.82Chemie (FES)
Sequence modifications
Ak: 1 - 247 (UniProt: A0A7J6KEY9)
PDBExternal DatabaseDetails
Asp 246Arg 246conflict
Al: 0 - 743 (UniProt: A0A7J6JZ22)
PDBExternal DatabaseDetails
Trp 670Tyr 671conflict
Trp 673Tyr 674conflict
Am: 1 - 121 (UniProt: B9PY19)
PDBExternal DatabaseDetails
Ser 38Tyr 38conflict
An: 1 - 679 (UniProt: A0A7J6K7U7)
PDBExternal DatabaseDetails
Gln 401Ala 401conflict
Arg 405Ser 405conflict
Aq: 1 - 438 (UniProt: A0A7J6JXG2)
PDBExternal DatabaseDetails
Lys 398Arg 398conflict
Asp 399Ala 399conflict
Thr 400Gly 400conflict
AH: -360 - 35 (UniProt: A0A0F7V869)
PDBExternal DatabaseDetails
Asn 35Arg 396conflict
Xa: -362 - 181 (UniProt: A0A7J6JZ23)
PDBExternal DatabaseDetails
Trp 113Lys 476conflict
Lys 114Gly 477conflict
Gly 115Asn 478conflict
Asn 116Arg 479conflict
Xg: 12 - 486 (UniProt: A0A7J6KC93)
PDBExternal DatabaseDetails
Val 1-expression tag
Gly 2-expression tag
Val 3-expression tag
Leu 4-expression tag
Ala 5-expression tag
Ser 6-expression tag
Leu 7-expression tag
Thr 8-expression tag
Ser 9-expression tag
Gly 10-expression tag
Gln 11-expression tag
Xh: 1 - 632 (UniProt: A0A7J6KAP7)
PDBExternal DatabaseDetails
Arg 600-insertion
Arg 601-insertion
Lys 602-insertion
Arg 603-insertion
Glu 604-insertion
Asn 605-insertion
Phe 606-insertion
Xj: 1 - 955 (UniProt: A0A7J6K4L1)
PDBExternal DatabaseDetails
His 781Leu 781conflict
XB: -94 - 103 (UniProt: A0A7J6K9K6)
PDBExternal DatabaseDetails
Val 85Lys 180conflict
Ala 86Glu 181conflict
Val 88Ile 183conflict
Lys 89Val 184conflict
Glu 90Ala 185conflict
XH: -159 - 181 (UniProt: A0A7J6JUA9)
PDBExternal DatabaseDetails
His -145Gln 15conflict
Gly -113Arg 47conflict
Val -71Leu 89conflict
Thr -19Pro 141conflict
Arg -1Ser 159conflict
Val 81Ile 241conflict
Ua: 0 - 25 (UniProt: A0A7J6JXW0)
PDBExternal DatabaseDetails
Ala 2Arg 314conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains108
Total formula weight3934910.9
Non-Polymers*Number of molecules3
Total formula weight417.0
All*Total formula weight3935327.9
*Water molecules are not included.

247947

PDB entries from 2026-01-21

PDB statisticsPDBj update infoContact PDBjnumon