9HCG
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, MRM2, GTPBP7 and MALSU1-L0R8F8-mt-ACP complex, State D (SAMC knock-out)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S rRNA (1584-MER) | polymer | 1584 | 508601.9 | 1 | GenBank (10336604) | Mus musculus (house mouse) | |
| 2 | B (B) | tRNA-Phe (68-MER) | polymer | 68 | 21862.1 | 1 | GenBank (10336604) | Mus musculus (house mouse) | |
| 3 | C (D) | Large ribosomal subunit protein uL2m | polymer | 246 | 27168.5 | 1 | UniProt (Q9D773) Pfam (PF00181) Pfam (PF03947) | Mus musculus (house mouse) | 39S ribosomal protein L2,mitochondrial,L2mt,MRP-L2 |
| 4 | D (E) | Large ribosomal subunit protein uL3m | polymer | 308 | 34843.8 | 1 | UniProt (Q99N95) Pfam (PF00297) | Mus musculus (house mouse) | 39S ribosomal protein L3,mitochondrial,L3mt,MRP-L3 |
| 5 | E (F) | Large ribosomal subunit protein uL4m | polymer | 250 | 28410.8 | 1 | UniProt (Q9DCU6) Pfam (PF00573) | Mus musculus (house mouse) | 39S ribosomal protein L4,mitochondrial,L4mt,MRP-L4 |
| 6 | F (H) | Large ribosomal subunit protein bL9m | polymer | 95 | 11058.8 | 1 | UniProt (Q99N94) Pfam (PF25131) Pfam (PF01281) | Mus musculus (house mouse) | 39S ribosomal protein L9,mitochondrial,L9mt,MRP-L9 |
| 7 | G (I) | Large ribosomal subunit protein uL10m | polymer | 262 | 29438.6 | 1 | UniProt (Q3TBW2) | Mus musculus (house mouse) | 39S ribosomal protein L10,mitochondrial,L10mt,MRP-L10 |
| 8 | H (J) | Large ribosomal subunit protein uL11m | polymer | 175 | 18853.0 | 1 | UniProt (Q9CQF0) Pfam (PF03946) Pfam (PF00298) | Mus musculus (house mouse) | 39S ribosomal protein L11,mitochondrial,L11mt,MRP-L11 |
| 9 | I (K) | Large ribosomal subunit protein uL13m | polymer | 177 | 20576.7 | 1 | UniProt (Q9D1P0) Pfam (PF00572) | Mus musculus (house mouse) | 39S ribosomal protein L13,mitochondrial,L13mt,MRP-L13 |
| 10 | J (L) | Large ribosomal subunit protein uL14m | polymer | 115 | 12751.9 | 1 | UniProt (Q9D1I6) Pfam (PF00238) | Mus musculus (house mouse) | 39S ribosomal protein L14,mitochondrial,L14mt,MRP-L14 |
| 11 | K (M) | Large ribosomal subunit protein uL15m | polymer | 287 | 32847.0 | 1 | UniProt (Q9CPR5) Pfam (PF00828) | Mus musculus (house mouse) | 39S ribosomal protein L15,mitochondrial,L15mt,MRP-L15 |
| 12 | L (N) | Large ribosomal subunit protein uL16m | polymer | 222 | 25582.9 | 1 | UniProt (Q99N93) Pfam (PF00252) | Mus musculus (house mouse) | 39S ribosomal protein L16,mitochondrial,L16mt,MRP-L16 |
| 13 | M (O) | Large ribosomal subunit protein bL17m | polymer | 153 | 17908.7 | 1 | UniProt (Q9D8P4) Pfam (PF01196) | Mus musculus (house mouse) | 39S ribosomal protein L17,mitochondrial,L17mt,MRP-L17 |
| 14 | N (P) | Large ribosomal subunit protein uL18m | polymer | 141 | 16407.7 | 1 | UniProt (Q9CQL5) Pfam (PF00861) | Mus musculus (house mouse) | 39S ribosomal protein L18,mitochondrial,L18mt,MRP-L18 |
| 15 | O (Q) | Large ribosomal subunit protein bL19m | polymer | 217 | 25467.5 | 1 | UniProt (Q9D338) Pfam (PF01245) | Mus musculus (house mouse) | 39S ribosomal protein L19,mitochondrial,L19mt,MRP-L19 |
| 16 | P (R) | Large ribosomal subunit protein bL20m | polymer | 140 | 16482.4 | 1 | UniProt (Q9CQL4) Pfam (PF00453) | Mus musculus (house mouse) | 39S ribosomal protein L20,mitochondrial,L20mt,MRP-L20 |
| 17 | Q (S) | Large ribosomal subunit protein bL21m | polymer | 159 | 18457.6 | 1 | UniProt (Q9D1N9) Pfam (PF00829) | Mus musculus (house mouse) | 39S ribosomal protein L21,mitochondrial,L21mt,MRP-L21 |
| 18 | R (T) | Large ribosomal subunit protein uL22m | polymer | 166 | 19504.8 | 1 | UniProt (Q8BU88) Pfam (PF00237) | Mus musculus (house mouse) | 39S ribosomal protein L22,mitochondrial,L22mt,MRP-L22 |
| 19 | S (U) | Large ribosomal subunit protein uL23m | polymer | 145 | 17014.4 | 1 | UniProt (O35972) Pfam (PF00276) | Mus musculus (house mouse) | 39S ribosomal protein L23,mitochondrial,L23mt,MRP-L23,L23 mitochondrial-related protein |
| 20 | T (V) | Large ribosomal subunit protein uL24m | polymer | 207 | 24016.4 | 1 | UniProt (Q9CQ06) Pfam (PF00467) Pfam (PF17136) | Mus musculus (house mouse) | 39S ribosomal protein L24,mitochondrial,L24mt,MRP-L24 |
| 21 | U (W) | Large ribosomal subunit protein bL27m | polymer | 100 | 11264.1 | 1 | UniProt (Q99N92) Pfam (PF01016) | Mus musculus (house mouse) | 39S ribosomal protein L27,mitochondrial,L27mt,MRP-L27 |
| 22 | V (X) | Large ribosomal subunit protein bL28m | polymer | 242 | 28613.1 | 1 | UniProt (Q9D1B9) Pfam (PF00830) | Mus musculus (house mouse) | 39S ribosomal protein L28,mitochondrial,L28mt,MRP-L28 |
| 23 | W (Y) | Large ribosomal subunit protein uL29m | polymer | 176 | 21602.1 | 1 | UniProt (Q8K2Y7) Pfam (PF06984) | Mus musculus (house mouse) | 39S ribosomal protein L47,mitochondrial,L47mt,MRP-L47 |
| 24 | X (Z) | Large ribosomal subunit protein uL30m | polymer | 121 | 14040.5 | 1 | UniProt (Q9D7N6) Pfam (PF00327) | Mus musculus (house mouse) | 39S ribosomal protein L30,mitochondrial,L30mt,MRP-L30 |
| 25 | Y (x) | 5-cytosine rRNA methyltransferase NSUN4 | polymer | 345 | 38580.0 | 1 | UniProt (Q9CZ57) Pfam (PF01189) | Mus musculus (house mouse) | 5-cytosine tRNA methyltransferase NSUN4,NOL1/NOP2/Sun domain family member 4,Sperm head and tail associated protein |
| 26 | Z (0) | Large ribosomal subunit protein bL32m | polymer | 108 | 12618.7 | 1 | UniProt (Q9DCI9) Pfam (PF01783) | Mus musculus (house mouse) | 39S ribosomal protein L32,mitochondrial,L32mt,MRP-L32,Heart-expressed gene 1 protein |
| 27 | AA (1) | Large ribosomal subunit protein bL33m | polymer | 52 | 6079.3 | 1 | UniProt (Q9CQP0) Pfam (PF00471) | Mus musculus (house mouse) | 39S ribosomal protein L33,mitochondrial,L33mt,MRP-L33 |
| 28 | BA (2) | Large ribosomal subunit protein bL34m | polymer | 46 | 5420.4 | 1 | UniProt (Q99N91) Pfam (PF00468) | Mus musculus (house mouse) | 39S ribosomal protein L34,mitochondrial,L34mt,MRP-L34 |
| 29 | CA (3) | Large ribosomal subunit protein bL35m | polymer | 95 | 11703.9 | 1 | UniProt (Q9CQL6) Pfam (PF01632) | Mus musculus (house mouse) | 39S ribosomal protein L35,mitochondrial,L35mt,MRP-L35 |
| 30 | DA (4) | Large ribosomal subunit protein bL36m | polymer | 37 | 4623.7 | 1 | UniProt (Q99N90) Pfam (PF00444) | Mus musculus (house mouse) | 39S ribosomal protein L36,mitochondrial,L36mt,MRP-L36 |
| 31 | EA (6) | Large ribosomal subunit protein mL38 | polymer | 335 | 40115.2 | 1 | UniProt (Q8K2M0) Pfam (PF01161) | Mus musculus (house mouse) | 39S ribosomal protein L38,mitochondrial,L38mt,MRP-L38 |
| 32 | FA (7) | Large ribosomal subunit protein mL39 | polymer | 292 | 33902.0 | 1 | UniProt (Q9JKF7) | Mus musculus (house mouse) | 39S ribosomal protein L39,mitochondrial,L39mt,MRP-L39 |
| 33 | GA (b) | Large ribosomal subunit protein mL43 | polymer | 148 | 16787.1 | 1 | UniProt (Q5RL20) Pfam (PF05047) | Mus musculus (house mouse) | |
| 34 | HA (c) | Large ribosomal subunit protein mL44 | polymer | 290 | 33030.9 | 1 | UniProt (Q9CY73) Pfam (PF22935) Pfam (PF22892) | Mus musculus (house mouse) | 39S ribosomal protein L44,mitochondrial,L44mt,MRP-L44 |
| 35 | IA (d) | Large ribosomal subunit protein mL45 | polymer | 306 | 35463.9 | 1 | UniProt (Q9D0Q7) Pfam (PF04280) | Mus musculus (house mouse) | 39S ribosomal protein L45,mitochondrial,L45mt,MRP-L45 |
| 36 | JA (e) | Large ribosomal subunit protein mL46 | polymer | 283 | 32175.7 | 1 | UniProt (Q9EQI8) Pfam (PF11788) | Mus musculus (house mouse) | 39S ribosomal protein L46,mitochondrial,L46mt,MRP-L46 |
| 37 | KA (f) | Large ribosomal subunit protein mL48 | polymer | 128 | 14725.8 | 1 | UniProt (Q8JZS9) Pfam (PF00338) | Mus musculus (house mouse) | 39S ribosomal protein L48,mitochondrial,L48mt,MRP-L48 |
| 38 | LA (g) | Large ribosomal subunit protein mL49 | polymer | 132 | 15412.7 | 1 | UniProt (Q9CQ40) Pfam (PF05046) | Mus musculus (house mouse) | 39S ribosomal protein L49,mitochondrial,L49mt,MRP-L49 |
| 39 | MA (h) | Large ribosomal subunit protein mL50 | polymer | 110 | 12412.2 | 1 | UniProt (Q8VDT9) Pfam (PF10501) | Mus musculus (house mouse) | 39S ribosomal protein L50,mitochondrial,L50mt,MRP-L50 |
| 40 | NA (i) | Large ribosomal subunit protein mL51 | polymer | 97 | 11744.8 | 1 | UniProt (Q9CPY1) Pfam (PF10244) | Mus musculus (house mouse) | 39S ribosomal protein L51,mitochondrial,L51mt,MRP-L51,bMRP-64,bMRP64 |
| 41 | OA (j) | Large ribosomal subunit protein mL52 | polymer | 121 | 13681.9 | 1 | UniProt (Q9D0Y8) Pfam (PF18699) | Mus musculus (house mouse) | 39S ribosomal protein L52,mitochondrial,L52mt,MRP-L52 |
| 42 | PA (k) | Large ribosomal subunit protein mL53 | polymer | 118 | 12756.6 | 1 | UniProt (Q9D1H8) Pfam (PF10780) | Mus musculus (house mouse) | 39S ribosomal protein L53,mitochondrial,L53mt,MRP-L53 |
| 43 | QA (o) | Large ribosomal subunit protein mL63 | polymer | 78 | 9126.4 | 1 | UniProt (Q9CQF8) Pfam (PF14978) | Mus musculus (house mouse) | Mitochondrial ribosomal protein 63,Mitochondrial ribosomal protein L57,Ribosomal protein 63,mitochondrial,mMRP63 |
| 44 | RA (p) | Large ribosomal subunit protein mL62 | polymer | 153 | 17574.0 | 1 | UniProt (Q8R035) Pfam (PF00472) | Mus musculus (house mouse) | 39S ribosomal protein L58,mitochondrial,MRP-L58,Immature colon carcinoma transcript 1 protein homolog,Peptidyl-tRNA hydrolase ICT1 |
| 45 | SA (q) | Large ribosomal subunit protein mL64 | polymer | 135 | 16082.3 | 1 | UniProt (Q9CR59) Pfam (PF10147) | Mus musculus (house mouse) | 39S ribosomal protein L59,mitochondrial,MRP-L59,Growth arrest and DNA damage-inducible proteins-interacting protein 1 |
| 46 | TA (r) | Large ribosomal subunit protein mL66 | polymer | 196 | 22363.5 | 1 | UniProt (Q99N85) Pfam (PF01084) | Mus musculus (house mouse) | 28S ribosomal protein S18-3,mitochondrial,MRP-S18-3,28S ribosomal protein S18a,MRP-S18-a,Mrps18a,S18mt-a |
| 47 | UA (s) | Large ribosomal subunit protein mL65 | polymer | 384 | 43897.3 | 1 | UniProt (Q9D0G0) Pfam (PF07147) | Mus musculus (house mouse) | 28S ribosomal protein S30,mitochondrial,MRP-S30,S30mt |
| 48 | VA (u) | Mitochondrial assembly of ribosomal large subunit protein 1 | polymer | 125 | 14705.9 | 1 | UniProt (Q9CWV0) Pfam (PF02410) | Mus musculus (house mouse) | |
| 49 | WA (v) | Predicted gene, 55359 | polymer | 69 | 8313.6 | 1 | UniProt (A0A2I3BQS8) Pfam (PF05347) | Mus musculus (house mouse) | |
| 50 | XA (w) | Acyl carrier protein, mitochondrial | polymer | 79 | 9131.5 | 1 | UniProt (Q9CR21) Pfam (PF00550) | Mus musculus (house mouse) | ACP,CI-SDAP,NADH-ubiquinone oxidoreductase 9.6 kDa subunit |
| 51 | YA (5) | Large ribosomal subunit protein mL37 | polymer | 394 | 45665.5 | 1 | UniProt (Q921S7) Pfam (PF07147) | Mus musculus (house mouse) | 39S ribosomal protein L37,mitochondrial,L37mt,MRP-L37 |
| 52 | ZA (8) | Large ribosomal subunit protein mL40 | polymer | 70 | 8402.4 | 1 | UniProt (Q9Z2Q5) Pfam (PF09812) | Mus musculus (house mouse) | 39S ribosomal protein L40,mitochondrial,L40mt,MRP-L40,Nuclear localization signal-containing protein deleted in velocardiofacial syndrome homolog |
| 53 | AB (9) | Large ribosomal subunit protein mL41 | polymer | 135 | 15284.6 | 1 | UniProt (Q9CQN7) Pfam (PF09809) | Mus musculus (house mouse) | 39S ribosomal protein L41,mitochondrial,L41mt,MRP-L41 |
| 54 | BB (a) | Large ribosomal subunit protein mL42 | polymer | 142 | 16521.8 | 1 | UniProt (Q9CPV3) Pfam (PF10210) | Mus musculus (house mouse) | 28S ribosomal protein S32,mitochondrial,MRP-S32,S32mt,39S ribosomal protein L31,L31mt,MRP-L31,39S ribosomal protein L42,L42mt,MRP-L42 |
| 55 | CB (m) | Large ribosomal subunit protein mL55 | polymer | 127 | 15152.6 | 1 | UniProt (Q9CZ83) Pfam (PF09776) | Mus musculus (house mouse) | 39S ribosomal protein L55,mitochondrial,L55mt,MRP-L55 |
| 56 | DB (z) | Mitochondrial ribosome-associated GTPase 1 | polymer | 326 | 36732.0 | 1 | UniProt (Q8R2R6) Pfam (PF01926) | Mus musculus (house mouse) | GTP-binding protein 7,Mitochondrial GTPase 1 |
| 57 | EB (l) | Large ribosomal subunit protein mL54 | polymer | 135 | 15450.9 | 1 | UniProt (Q9CPW3) Pfam (PF08561) | Mus musculus (house mouse) | 39S ribosomal protein L54,mitochondrial,L54mt,MRP-L54 |
| 58 | FB (t) | rRNA methyltransferase 2, mitochondrial | polymer | 246 | 27189.7 | 1 | UniProt (Q9CPY0) Pfam (PF01728) | Mus musculus (house mouse) | 16S rRNA (uridine(1369)-2'-O)-methyltransferase,16S rRNA [Um1369] 2'-O-methyltransferase,Protein ftsJ homolog 2 |
| 59 | GB (y) | Transcription termination factor 4, mitochondrial | polymer | 346 | 40306.2 | 1 | UniProt (Q8BVN4) Pfam (PF02536) | Mus musculus (house mouse) | Mitochondrial transcription termination factor 4,mTERF domain-containing protein 2 |
| 60 | AC, AD, AE, AF, BC... (A, E, M, O, 6) | MAGNESIUM ION | non-polymer | 24.3 | 105 | Chemie (MG) PubChem (888) | |||
| 61 | HF, IF (0, 4) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 62 | KF (r) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 1 | Chemie (FES) | |||
| 63 | LF (t) | S-ADENOSYL-L-HOMOCYSTEINE | non-polymer | 384.4 | 1 | Chemie (SAH) PubChem (16760024) PubChem (193) PubChem (13792) PubChem (177678424) PubChem (189149) PubChem (439155) PubChem (25210495) PubChem (21125603) PubChem (44361184) PubChem (25203782) PubChem (46936206) PubChem (50989525) PubChem (51380914) PubChem (52224398) PubChem (57544532) PubChem (52224400) PubChem (59046843) PubChem (59170628) PubChem (59576228) PubChem (66805708) PubChem (5284331) PubChem (70689219) PubChem (70702054) PubChem (70832431) PubChem (71170554) PubChem (13231890) PubChem (6419189) PubChem (118374891) PubChem (118560068) PubChem (126969526) PubChem (129105892) PubChem (164157219) PubChem (143518505) PubChem (154578335) PubChem (163054214) PubChem (163335525) | |||
| 64 | MF (A) | water | water | 18.0 | 1 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 59 |
| Total formula weight | 1715910.5 | |
| Non-Polymers* | Number of molecules | 109 |
| Total formula weight | 3243.1 | |
| All* | Total formula weight | 1719153.6 |
