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9HCG

Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, MRM2, GTPBP7 and MALSU1-L0R8F8-mt-ACP complex, State D (SAMC knock-out)

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
00003735molecular_functionstructural constituent of ribosome
00006412biological_processtranslation
00015934cellular_componentlarge ribosomal subunit
10003735molecular_functionstructural constituent of ribosome
10005840cellular_componentribosome
10006412biological_processtranslation
20003735molecular_functionstructural constituent of ribosome
20005840cellular_componentribosome
20006412biological_processtranslation
30003735molecular_functionstructural constituent of ribosome
30005840cellular_componentribosome
30006412biological_processtranslation
40003735molecular_functionstructural constituent of ribosome
40005840cellular_componentribosome
40006412biological_processtranslation
50003735molecular_functionstructural constituent of ribosome
50005739cellular_componentmitochondrion
50005743cellular_componentmitochondrial inner membrane
50005761cellular_componentmitochondrial ribosome
50005762cellular_componentmitochondrial large ribosomal subunit
50005840cellular_componentribosome
50006412biological_processtranslation
50032543biological_processmitochondrial translation
51990904cellular_componentribonucleoprotein complex
70000166molecular_functionnucleotide binding
80005762cellular_componentmitochondrial large ribosomal subunit
90003735molecular_functionstructural constituent of ribosome
90005739cellular_componentmitochondrion
90005743cellular_componentmitochondrial inner membrane
90005762cellular_componentmitochondrial large ribosomal subunit
90005840cellular_componentribosome
90006412biological_processtranslation
90006915biological_processapoptotic process
90032543biological_processmitochondrial translation
91990904cellular_componentribonucleoprotein complex
a0005739cellular_componentmitochondrion
a0005743cellular_componentmitochondrial inner membrane
a0005762cellular_componentmitochondrial large ribosomal subunit
a0005763cellular_componentmitochondrial small ribosomal subunit
a0005840cellular_componentribosome
a0005886cellular_componentplasma membrane
a0032543biological_processmitochondrial translation
a1990904cellular_componentribonucleoprotein complex
b0003735molecular_functionstructural constituent of ribosome
b0005739cellular_componentmitochondrion
b0005743cellular_componentmitochondrial inner membrane
b0005762cellular_componentmitochondrial large ribosomal subunit
b0005840cellular_componentribosome
b0032543biological_processmitochondrial translation
b1990904cellular_componentribonucleoprotein complex
c0003725molecular_functiondouble-stranded RNA binding
c0004525molecular_functionribonuclease III activity
c0006396biological_processRNA processing
d0003735molecular_functionstructural constituent of ribosome
d0005739cellular_componentmitochondrion
d0005743cellular_componentmitochondrial inner membrane
d0005762cellular_componentmitochondrial large ribosomal subunit
d0005840cellular_componentribosome
d0032543biological_processmitochondrial translation
d1990904cellular_componentribonucleoprotein complex
D0003735molecular_functionstructural constituent of ribosome
D0005840cellular_componentribosome
D0006412biological_processtranslation
e0003735molecular_functionstructural constituent of ribosome
e0005654cellular_componentnucleoplasm
e0005739cellular_componentmitochondrion
e0005743cellular_componentmitochondrial inner membrane
e0005762cellular_componentmitochondrial large ribosomal subunit
e0005829cellular_componentcytosol
e0005840cellular_componentribosome
e0030054cellular_componentcell junction
e0032543biological_processmitochondrial translation
e1990904cellular_componentribonucleoprotein complex
E0003735molecular_functionstructural constituent of ribosome
E0005840cellular_componentribosome
E0006412biological_processtranslation
f0005761cellular_componentmitochondrial ribosome
F0003735molecular_functionstructural constituent of ribosome
F0005840cellular_componentribosome
F0006412biological_processtranslation
g0003735molecular_functionstructural constituent of ribosome
g0005840cellular_componentribosome
g0006412biological_processtranslation
h0005739cellular_componentmitochondrion
H0003735molecular_functionstructural constituent of ribosome
H0005840cellular_componentribosome
H0006412biological_processtranslation
i0003735molecular_functionstructural constituent of ribosome
I0003735molecular_functionstructural constituent of ribosome
I0005654cellular_componentnucleoplasm
I0005739cellular_componentmitochondrion
I0005743cellular_componentmitochondrial inner membrane
I0005762cellular_componentmitochondrial large ribosomal subunit
I0005840cellular_componentribosome
I0006412biological_processtranslation
I0032543biological_processmitochondrial translation
I1990904cellular_componentribonucleoprotein complex
j0003735molecular_functionstructural constituent of ribosome
j0005654cellular_componentnucleoplasm
j0005739cellular_componentmitochondrion
j0005743cellular_componentmitochondrial inner membrane
j0005762cellular_componentmitochondrial large ribosomal subunit
j0005840cellular_componentribosome
j0006412biological_processtranslation
j0032543biological_processmitochondrial translation
j1990904cellular_componentribonucleoprotein complex
J0003735molecular_functionstructural constituent of ribosome
J0005739cellular_componentmitochondrion
J0005743cellular_componentmitochondrial inner membrane
J0005762cellular_componentmitochondrial large ribosomal subunit
J0005840cellular_componentribosome
J0006412biological_processtranslation
J0032543biological_processmitochondrial translation
J0070180molecular_functionlarge ribosomal subunit rRNA binding
J1990904cellular_componentribonucleoprotein complex
k0003674molecular_functionmolecular_function
k0005739cellular_componentmitochondrion
k0005743cellular_componentmitochondrial inner membrane
k0005762cellular_componentmitochondrial large ribosomal subunit
k0005840cellular_componentribosome
k0032543biological_processmitochondrial translation
k1990904cellular_componentribonucleoprotein complex
K0003729molecular_functionmRNA binding
K0003735molecular_functionstructural constituent of ribosome
K0005739cellular_componentmitochondrion
K0005743cellular_componentmitochondrial inner membrane
K0005761cellular_componentmitochondrial ribosome
K0005762cellular_componentmitochondrial large ribosomal subunit
K0005840cellular_componentribosome
K0006412biological_processtranslation
K0017148biological_processnegative regulation of translation
K0032543biological_processmitochondrial translation
K1990904cellular_componentribonucleoprotein complex
l0003735molecular_functionstructural constituent of ribosome
l0005739cellular_componentmitochondrion
l0005743cellular_componentmitochondrial inner membrane
l0005762cellular_componentmitochondrial large ribosomal subunit
l0005840cellular_componentribosome
l0032543biological_processmitochondrial translation
l1990904cellular_componentribonucleoprotein complex
L0003735molecular_functionstructural constituent of ribosome
L0005840cellular_componentribosome
L0006412biological_processtranslation
m0003735molecular_functionstructural constituent of ribosome
m0005739cellular_componentmitochondrion
m0005743cellular_componentmitochondrial inner membrane
m0005762cellular_componentmitochondrial large ribosomal subunit
m0005840cellular_componentribosome
m0006412biological_processtranslation
m0032543biological_processmitochondrial translation
m1990904cellular_componentribonucleoprotein complex
M0003735molecular_functionstructural constituent of ribosome
M0005739cellular_componentmitochondrion
M0005743cellular_componentmitochondrial inner membrane
M0005762cellular_componentmitochondrial large ribosomal subunit
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0007005biological_processmitochondrion organization
M0015934cellular_componentlarge ribosomal subunit
M0032543biological_processmitochondrial translation
M1990830biological_processcellular response to leukemia inhibitory factor
M1990904cellular_componentribonucleoprotein complex
N0003735molecular_functionstructural constituent of ribosome
N0005840cellular_componentribosome
N0006412biological_processtranslation
N0019843molecular_functionrRNA binding
o0005761cellular_componentmitochondrial ribosome
O0003735molecular_functionstructural constituent of ribosome
O0005840cellular_componentribosome
O0006412biological_processtranslation
p0003747molecular_functiontranslation release factor activity
p0006415biological_processtranslational termination
P0003735molecular_functionstructural constituent of ribosome
P0005840cellular_componentribosome
P0006412biological_processtranslation
q0005634cellular_componentnucleus
Q0003735molecular_functionstructural constituent of ribosome
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
r0003735molecular_functionstructural constituent of ribosome
r0005739cellular_componentmitochondrion
r0005743cellular_componentmitochondrial inner membrane
r0005762cellular_componentmitochondrial large ribosomal subunit
r0005763cellular_componentmitochondrial small ribosomal subunit
r0005840cellular_componentribosome
r0006412biological_processtranslation
r0032543biological_processmitochondrial translation
r0070181molecular_functionsmall ribosomal subunit rRNA binding
r1990904cellular_componentribonucleoprotein complex
R0003735molecular_functionstructural constituent of ribosome
R0005739cellular_componentmitochondrion
R0005743cellular_componentmitochondrial inner membrane
R0005761cellular_componentmitochondrial ribosome
R0005762cellular_componentmitochondrial large ribosomal subunit
R0005840cellular_componentribosome
R0006412biological_processtranslation
R0019843molecular_functionrRNA binding
R0032543biological_processmitochondrial translation
R1990904cellular_componentribonucleoprotein complex
s0003735molecular_functionstructural constituent of ribosome
s0005739cellular_componentmitochondrion
s0005840cellular_componentribosome
s0006412biological_processtranslation
S0003723molecular_functionRNA binding
S0003735molecular_functionstructural constituent of ribosome
S0005840cellular_componentribosome
S0006412biological_processtranslation
t0001510biological_processRNA methylation
t0005730cellular_componentnucleolus
t0005739cellular_componentmitochondrion
t0005759cellular_componentmitochondrial matrix
t0006364biological_processrRNA processing
t0008168molecular_functionmethyltransferase activity
t0008650molecular_functionrRNA (uridine-2'-O-)-methyltransferase activity
t0016740molecular_functiontransferase activity
t0031167biological_processrRNA methylation
t0032259biological_processmethylation
t1902775biological_processmitochondrial large ribosomal subunit assembly
T0003735molecular_functionstructural constituent of ribosome
T0005840cellular_componentribosome
T0006412biological_processtranslation
T0015934cellular_componentlarge ribosomal subunit
U0001650cellular_componentfibrillar center
U0003735molecular_functionstructural constituent of ribosome
U0005739cellular_componentmitochondrion
U0005743cellular_componentmitochondrial inner membrane
U0005762cellular_componentmitochondrial large ribosomal subunit
U0005840cellular_componentribosome
U0006412biological_processtranslation
U0022626cellular_componentcytosolic ribosome
U0032543biological_processmitochondrial translation
U0044391cellular_componentribosomal subunit
U1990904cellular_componentribonucleoprotein complex
v0000266biological_processmitochondrial fission
v0005739cellular_componentmitochondrion
v0005759cellular_componentmitochondrial matrix
v0032981biological_processmitochondrial respiratory chain complex I assembly
v0070131biological_processpositive regulation of mitochondrial translation
v0140978molecular_functionmitochondrial large ribosomal subunit binding
v1902775biological_processmitochondrial large ribosomal subunit assembly
V0003723molecular_functionRNA binding
V0003735molecular_functionstructural constituent of ribosome
V0005739cellular_componentmitochondrion
V0005743cellular_componentmitochondrial inner membrane
V0005762cellular_componentmitochondrial large ribosomal subunit
V0005840cellular_componentribosome
V0006412biological_processtranslation
V0032543biological_processmitochondrial translation
V1990904cellular_componentribonucleoprotein complex
w0006633biological_processfatty acid biosynthetic process
W0003735molecular_functionstructural constituent of ribosome
W0005840cellular_componentribosome
W0006412biological_processtranslation
x0000957biological_processmitochondrial RNA catabolic process
x0001510biological_processRNA methylation
x0003723molecular_functionRNA binding
x0005739cellular_componentmitochondrion
x0005759cellular_componentmitochondrial matrix
x0006364biological_processrRNA processing
x0006396biological_processRNA processing
x0008168molecular_functionmethyltransferase activity
x0008173molecular_functionRNA methyltransferase activity
x0009383molecular_functionrRNA (cytosine-C5-)-methyltransferase activity
x0016740molecular_functiontransferase activity
x0019843molecular_functionrRNA binding
x0031167biological_processrRNA methylation
x0032259biological_processmethylation
x0042254biological_processribosome biogenesis
x0062152molecular_functionmRNA (cytidine-5-)-methyltransferase activity
x0070181molecular_functionsmall ribosomal subunit rRNA binding
x0180026biological_processmitochondrial small ribosomal subunit assembly
x1902775biological_processmitochondrial large ribosomal subunit assembly
X0003735molecular_functionstructural constituent of ribosome
X0005739cellular_componentmitochondrion
X0005743cellular_componentmitochondrial inner membrane
X0005761cellular_componentmitochondrial ribosome
X0005762cellular_componentmitochondrial large ribosomal subunit
X0005829cellular_componentcytosol
X0005840cellular_componentribosome
X0032543biological_processmitochondrial translation
X1990904cellular_componentribonucleoprotein complex
y0003676molecular_functionnucleic acid binding
y0003723molecular_functionRNA binding
y0005739cellular_componentmitochondrion
y0005829cellular_componentcytosol
y0006364biological_processrRNA processing
y0007507biological_processheart development
y0019843molecular_functionrRNA binding
y0034337biological_processRNA folding
y0043010biological_processcamera-type eye development
y0043231cellular_componentintracellular membrane-bounded organelle
y0061668biological_processmitochondrial ribosome assembly
y0140517molecular_functionprotein-RNA adaptor activity
y0140691molecular_functionRNA folding chaperone
y1902775biological_processmitochondrial large ribosomal subunit assembly
Y0003735molecular_functionstructural constituent of ribosome
Y0005761cellular_componentmitochondrial ribosome
Y0006412biological_processtranslation
z0000166molecular_functionnucleotide binding
z0003924molecular_functionGTPase activity
z0005525molecular_functionGTP binding
z0005654cellular_componentnucleoplasm
z0005739cellular_componentmitochondrion
z0005743cellular_componentmitochondrial inner membrane
z0005759cellular_componentmitochondrial matrix
z0005761cellular_componentmitochondrial ribosome
z0006417biological_processregulation of translation
z0044065biological_processregulation of respiratory system process
z0070129biological_processregulation of mitochondrial translation
z1902775biological_processmitochondrial large ribosomal subunit assembly
Z0003735molecular_functionstructural constituent of ribosome
Z0006412biological_processtranslation
Z0015934cellular_componentlarge ribosomal subunit
Functional Information from PROSITE/UniProt
site_idPS00012
Number of Residues16
DetailsPHOSPHOPANTETHEINE Phosphopantetheine attachment site. DLGLDSLDQVEIIMAM
ChainResidueDetails
wASP107-MET122

site_idPS00018
Number of Residues13
DetailsEF_HAND_1 EF-hand calcium-binding domain. DIDAEKLMCpqEI
ChainResidueDetails
wASP132-ILE144

site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FrpgqyvDvtAkTiGKGfqGvmkR
ChainResidueDetails
EPHE198-ARG221

site_idPS00783
Number of Residues23
DetailsRIBOSOMAL_L13 Ribosomal protein L13 signature. IYGMLPknlh.RRtmmqrLhLFpD
ChainResidueDetails
KILE108-ASP130

site_idPS01108
Number of Residues18
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. GDmVeILeGkdAGkq.GkV
ChainResidueDetails
VGLY59-VAL76

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues109
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsModified residue: {"description":"Omega-N-methylarginine","evidences":[{"source":"UniProtKB","id":"Q9BYD3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsModified residue: {"description":"N-acetylserine","evidences":[{"source":"UniProtKB","id":"Q9BYD1","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues29
DetailsCompositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P49406","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues33
DetailsDomain: {"description":"KOW"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"Q96A35","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"Q9HD33","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues1
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PROSITE-ProRule","id":"PRU01023","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"Q96CB9","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"Q96CB9","evidenceCode":"ECO:0000250"},{"source":"PROSITE-ProRule","id":"PRU01023","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01023","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"Q96CB9","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI14
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"Q9BYC8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI15
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"Q9BQ48","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI16
Number of Residues23
DetailsCoiled coil: {"evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI17
Number of Residues66
DetailsDomain: {"description":"TGS","evidences":[{"source":"PROSITE-ProRule","id":"PRU01228","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI18
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"Q9NYK5","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI20
Number of Residues70
DetailsDomain: {"description":"DRBM","evidences":[{"source":"PROSITE-ProRule","id":"PRU00266","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI21
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"Q9H2W6","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI22
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"PubMed","id":"23806337","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI23
Number of Residues11
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI25
Number of Residues75
DetailsDomain: {"description":"Carrier","evidences":[{"source":"PROSITE-ProRule","id":"PRU00258","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI26
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"23576753","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI27
Number of Residues1
DetailsModified residue: {"description":"O-(pantetheine 4'-phosphoryl)serine","evidences":[{"source":"PROSITE-ProRule","id":"PRU00258","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI28
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"UniProtKB","id":"P0C0R7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI29
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"Q9UI43","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI30
Number of Residues30
DetailsRepeat: {"description":"MTERF 1"}
ChainResidueDetails

site_idSWS_FT_FI31
Number of Residues27
DetailsRepeat: {"description":"MTERF 2"}
ChainResidueDetails

site_idSWS_FT_FI32
Number of Residues30
DetailsRepeat: {"description":"MTERF 3"}
ChainResidueDetails

site_idSWS_FT_FI33
Number of Residues25
DetailsRepeat: {"description":"MTERF 4"}
ChainResidueDetails

site_idSWS_FT_FI34
Number of Residues28
DetailsRepeat: {"description":"MTERF 5"}
ChainResidueDetails

site_idSWS_FT_FI35
Number of Residues17
DetailsRegion: {"description":"Dimerization with NSUN4","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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