9H6I
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, YB (2, W2) | Transfer RNA Phe (GAA) | polymer | 76 | 24571.6 | 2 | GenBank (19120) | Arabidopsis thaliana (thale cress) | |
| 2 | B (3) | Ribosomal RNA 5.8S | polymer | 164 | 52827.4 | 1 | GenBank (731187285) | Arabidopsis thaliana (thale cress) | |
| 3 | C (A) | Ribosomal RNA 25S | polymer | 3385 | 1096394.1 | 1 | Arabidopsis thaliana (thale cress) | ||
| 4 | D (C3) | Ribosomal RNA 5S | polymer | 121 | 38917.1 | 1 | GenBank (2442578393) | Arabidopsis thaliana (thale cress) | |
| 5 | E (BC) | Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v | polymer | 25 | 3445.4 | 1 | UniProt (P62120) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L41,Large ribosomal subunit protein eL41z/eL41y/eL41x/eL41w/eL41v |
| 6 | F (BM) | Large ribosomal subunit protein uL22z | polymer | 176 | 19937.9 | 1 | UniProt (Q93VI3) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L17-1 |
| 7 | G (BO) | Large ribosomal subunit protein uL24z | polymer | 146 | 16983.7 | 1 | UniProt (P51414) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L26-1 |
| 8 | H (AR) | 60S ribosomal protein L29 | polymer | 83 | 9410.9 | 1 | UniProt (F4JC32) | Arabidopsis thaliana (thale cress) | |
| 9 | I (AU) | Large ribosomal subunit protein eL31y | polymer | 119 | 13852.1 | 1 | UniProt (Q9STR1) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L31-2 |
| 10 | J (Ma) | Small ribosomal subunit protein eS26y | polymer | 131 | 14762.1 | 1 | UniProt (P49206) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S26-1 |
| 11 | K (Ia) | Large ribosomal subunit protein uL6z/uL6y | polymer | 194 | 22059.7 | 1 | UniProt (P49209) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L9-1 |
| 12 | L (AE) | Small ribosomal subunit protein uS8z/uS8w | polymer | 130 | 14829.4 | 1 | UniProt (P42798) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S15a-1 |
| 13 | M (AX) | Large ribosomal subunit protein eL36y | polymer | 112 | 12713.3 | 1 | UniProt (Q9M352) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L36-2 |
| 14 | N (AP) | Large ribosomal subunit protein eL27x | polymer | 135 | 15644.7 | 1 | UniProt (P51419) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L27-3 |
| 15 | O (Ja) | Small ribosomal subunit protein eS4x | polymer | 262 | 29875.0 | 1 | UniProt (Q8VYK6) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S4-3 |
| 16 | P (Ea) | Large ribosomal subunit protein eL15z | polymer | 204 | 24297.2 | 1 | UniProt (O23515) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L15-1 |
| 17 | Q (AL) | Ribosomal protein L18ae/LX family protein | polymer | 217 | 25781.6 | 1 | UniProt (A0A1P8AY36) | Arabidopsis thaliana (thale cress) | |
| 18 | R (Va) | Small ribosomal subunit protein uS12y | polymer | 142 | 15770.6 | 1 | UniProt (P49201) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S23-2,S12 |
| 19 | S (Ka) | Small ribosomal subunit protein eS24y | polymer | 133 | 15458.3 | 1 | UniProt (Q8LC83) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S24-2 |
| 20 | T (AW) | Large ribosomal subunit protein eL33y | polymer | 112 | 12941.0 | 1 | UniProt (Q9C912) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L35a-3 |
| 21 | U (BD) | Large ribosomal subunit protein eL42z/eL42y | polymer | 105 | 12160.4 | 1 | UniProt (O23290) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L36a |
| 22 | V (BS) | Large ribosomal subunit protein uL3z | polymer | 389 | 44666.3 | 1 | UniProt (P17094) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L3-1,Protein EMBRYO DEFECTIVE 2207 |
| 23 | W (AM) | Large ribosomal subunit protein eL21z/eL21y | polymer | 164 | 18693.8 | 1 | UniProt (Q43291) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L21-1 |
| 24 | X (AC) | Small ribosomal subunit protein uS5y/uS5u/uS5v | polymer | 284 | 30826.5 | 1 | UniProt (Q93VB8) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S2-2 |
| 25 | Y (BI) | Large ribosomal subunit protein uL14x/uL14z/uL14y | polymer | 140 | 15052.8 | 1 | UniProt (P49690) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L23,Protein EMBRYO DEFECTIVE 2171 |
| 26 | Z (AH) | Large ribosomal subunit protein eL14y | polymer | 134 | 15536.5 | 1 | UniProt (Q9T043) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L14-2 |
| 27 | AA (BT) | Large ribosomal subunit protein uL4z | polymer | 406 | 44783.3 | 1 | UniProt (Q9SF40) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L4-1,L1 |
| 28 | BA (AV) | Large ribosomal subunit protein eL32z | polymer | 133 | 15539.3 | 1 | UniProt (P49211) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L32-1 |
| 29 | CA (AD) | Small ribosomal subunit protein uS7y | polymer | 207 | 22956.5 | 1 | UniProt (P51427) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S5-2,AtRPS5A,Protein ARABIDOPSIS MINUTE-LIKE 1 |
| 30 | DA (AJ) | Large ribosomal subunit protein eL18x | polymer | 187 | 21012.9 | 1 | UniProt (Q940B0) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L18-3 |
| 31 | EA (BQ) | Large ribosomal subunit protein uL2z | polymer | 258 | 27918.3 | 1 | UniProt (P46286) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L2,60S ribosomal protein L8-1,Protein EMBRYO DEFECTIVE 2296 |
| 32 | FA (BH) | Large ribosomal subunit protein uL13y | polymer | 206 | 23510.1 | 1 | UniProt (Q9LRX8) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L13a-2 |
| 33 | GA (Da) | Small ribosomal subunit protein uS15y | polymer | 151 | 17123.2 | 1 | UniProt (P59224) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S13-2 |
| 34 | HA (BK) | Large ribosomal subunit protein uL18z | polymer | 301 | 34420.1 | 1 | UniProt (Q8LBI1) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L5-1,Ribosomal protein L5 A,Protein ASYMMETRIC LEAVES1/2 ENHANCER 6,Protein OLIGOCELLULA 5,Protein PIGGYBACK 3 |
| 35 | IA (AT) | Large ribosomal subunit protein eL30y | polymer | 112 | 12311.4 | 1 | UniProt (Q8VZ19) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L30-2 |
| 36 | JA (Pa) | Small ribosomal subunit protein eS30z/eS30y/eS30x | polymer | 62 | 6910.2 | 1 | UniProt (P49689) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S30 |
| 37 | KA (BP) | Large ribosomal subunit protein uL29x | polymer | 123 | 14215.1 | 1 | UniProt (Q9M3D2) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L35-3 |
| 38 | LA (BN) | Large ribosomal subunit protein uL23y | polymer | 154 | 17436.9 | 1 | UniProt (Q9M3C3) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L23a-2 |
| 39 | MA (BG) | Large ribosomal subunit protein eL8y | polymer | 256 | 29095.6 | 1 | UniProt (Q9LZH9) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L7a-2 |
| 40 | NA (Fa) | Large ribosomal subunit protein eL34z | polymer | 120 | 13740.3 | 1 | UniProt (Q42351) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L34-1 |
| 41 | OA (Ha) | Large ribosomal subunit protein uL15x | polymer | 146 | 16498.5 | 1 | UniProt (P49637) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L27a-3 |
| 42 | PA (BU) | Large ribosomal subunit protein uL5z | polymer | 182 | 20867.2 | 1 | UniProt (P42795) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L11-1,L16A |
| 43 | QA (BR) | Ribosomal protein L30/L7 family protein | polymer | 247 | 28573.6 | 1 | UniProt (F4IT48) | Arabidopsis thaliana (thale cress) | |
| 44 | RA (Xa) | Small ribosomal subunit protein uS17z | polymer | 160 | 17996.2 | 1 | UniProt (P16181) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S11-1,Protein EMBRYO DEFECTIVE 1080 |
| 45 | SA (BV) | Small ribosomal subunit protein eS1y | polymer | 262 | 29857.6 | 1 | UniProt (Q42262) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S3a-2 |
| 46 | TA (BJ) | Large ribosomal subunit protein uL16y | polymer | 221 | 24962.3 | 1 | UniProt (Q08770) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L10-2,Wilms tumor suppressor protein homolog |
| 47 | UA (AO) | Large ribosomal subunit protein eL24z | polymer | 164 | 18900.4 | 1 | UniProt (Q42347) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L24-1 |
| 48 | VA (BW) | Small ribosomal subunit protein eS21y | polymer | 82 | 9125.2 | 1 | UniProt (Q3E902) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S21-2 |
| 49 | WA (AK) | Large ribosomal subunit protein eL19x | polymer | 214 | 24676.6 | 1 | UniProt (Q9SRX2) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L19-1,Protein EMBRYO DEFECTIVE 2386 |
| 50 | XA (Na) | Small ribosomal subunit protein eS27y | polymer | 86 | 9614.2 | 1 | UniProt (Q9M2F1) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S27-2 |
| 51 | YA (AB) | Small ribosomal subunit protein uS4y | polymer | 197 | 23207.8 | 1 | UniProt (Q9FLF0) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S9-2 |
| 52 | ZA (BF) | Large ribosomal subunit protein eL6y | polymer | 233 | 26062.7 | 1 | UniProt (Q9C9C6) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L6-2 |
| 53 | AB (AA) | Small ribosomal subunit protein uS3z | polymer | 250 | 27559.2 | 1 | UniProt (Q9SIP7) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S3-1 |
| 54 | BB (AG) | Large ribosomal subunit protein eL13z | polymer | 206 | 23824.0 | 1 | UniProt (P41127) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L13-1,Protein BBC1 homolog |
| 55 | CB (Ga) | Ubiquitin-ribosomal protein eL40z fusion protein | polymer | 128 | 14790.5 | 1 | UniProt (B9DHA6) | Arabidopsis thaliana (thale cress) | |
| 56 | DB (BA) | Large ribosomal subunit protein eL39z/eL39x | polymer | 51 | 6435.8 | 1 | UniProt (P51424) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L39-1 |
| 57 | EB (AF) | Small ribosomal subunit protein uS9z | polymer | 146 | 16663.5 | 1 | UniProt (Q9SK22) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S16-1 |
| 58 | FB (Wa) | Small ribosomal subunit protein uS13z/uS13y/uS13x | polymer | 152 | 17582.5 | 1 | UniProt (P34788) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S18 |
| 59 | GB (Ta) | Small ribosomal subunit protein eS6y | polymer | 249 | 28228.2 | 1 | UniProt (P51430) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S6-2,Protein EMBRYO DEFECTIVE 3010 |
| 60 | HB (AZ) | Large ribosomal subunit protein eL38z/eL38y | polymer | 69 | 8139.7 | 1 | UniProt (O22860) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L38 |
| 61 | IB (BE) | Large ribosomal subunit protein eL43y | polymer | 92 | 10264.2 | 1 | UniProt (Q8RXU5) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L37a-2 |
| 62 | JB (Za) | Small ribosomal subunit protein uS2z | polymer | 298 | 32320.4 | 1 | UniProt (Q08682) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein Sa-1,Laminin receptor homolog,p40 |
| 63 | KB (AQ) | Large ribosomal subunit protein eL28z | polymer | 143 | 15926.5 | 1 | UniProt (O82204) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L28-1,Protein ASYMMETRIC LEAVES1/2 ENHANCER 5 |
| 64 | LB (Oa) | Small ribosomal subunit protein eS28x | polymer | 64 | 7355.6 | 1 | UniProt (P34789) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S28-2 |
| 65 | MB (Ua) | Small ribosomal subunit protein uS11y | polymer | 150 | 16303.8 | 1 | UniProt (Q9CAX6) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S14-2 |
| 66 | NB (Ya) | Small ribosomal subunit protein uS19y | polymer | 150 | 16781.9 | 1 | UniProt (Q9FY65) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S15-3 |
| 67 | OB (BB) | Small ribosomal subunit protein eS17w | polymer | 141 | 16048.7 | 1 | UniProt (Q9LZ17) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S17-4 |
| 68 | PB (AN) | Large ribosomal subunit protein eL22z | polymer | 124 | 14045.2 | 1 | UniProt (Q9M9W1) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L22-2 |
| 69 | QB (Ra) | Small ribosomal subunit protein eS7x | polymer | 190 | 22101.7 | 1 | UniProt (Q8LD03) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S7-3 |
| 70 | RB (BL) | Small ribosomal subunit protein eS19x | polymer | 143 | 15726.2 | 1 | UniProt (Q9FNP8) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S19-3 |
| 71 | SB (La) | Small ribosomal subunit protein eS25w | polymer | 108 | 12079.3 | 1 | UniProt (Q9T029) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S25-4 |
| 72 | TB (Aa) | Small ribosomal subunit protein eS8z | polymer | 222 | 25047.8 | 1 | UniProt (Q93VG5) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S8-1 |
| 73 | UB (AY) | Large ribosomal subunit protein eL37z | polymer | 95 | 10844.7 | 1 | UniProt (Q8LFH7) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L37-1 |
| 74 | VB (Ca) | Small ribosomal subunit protein uS14z/uS14y/uS14x | polymer | 56 | 6443.5 | 1 | UniProt (Q680P8) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S29 |
| 75 | WB (h1) | Ribosomal RNA 18S | polymer | 1805 | 582777.6 | 1 | Arabidopsis thaliana (thale cress) | ||
| 76 | XB (B1) | Messenger RNA (poly-U) | polymer | 12 | 3629.0 | 1 | Arabidopsis thaliana (thale cress) | ||
| 77 | ZB (Ba) | Small ribosomal subunit protein uS10y | polymer | 122 | 13718.1 | 1 | UniProt (Q9STY6) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S20-2 |
| 78 | AC (AI) | Small ribosomal subunit protein eS10z | polymer | 177 | 19476.0 | 1 | UniProt (Q9SW09) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S10-1 |
| 79 | BC (L3) | Nascent polypeptide | polymer | 23 | 1975.4 | 1 | Arabidopsis thaliana (thale cress) | ||
| 80 | AD, BD, CC, CD, CR... (A, 3, h1) | N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE | non-polymer | 202.3 | 27 | Chemie (TER) | |||
| 81 | AE, AF, AG, AH, AI... (A, h1, BS, 3, AC...) | MAGNESIUM ION | non-polymer | 24.3 | 289 | Chemie (MG) | |||
| 82 | AL, AM, AN, AO, AP... (A, BD, h1, Ca, BS...) | POTASSIUM ION | non-polymer | 39.1 | 187 | Chemie (K) | |||
| 83 | LC (A) | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) | |||
| 84 | MC (A) | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 1 | Chemie (EPE) | |||
| 85 | AR, SQ, WP, WQ, YQ... (Ca, Ga, Ma, BE, AY...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
| 86 | AW, AX, AY, BW, BX... (AR, AT, AQ, AU, Pa...) | water | water | 18.0 | 10909 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 80 |
| Total formula weight | 3179386.1 | |
| Non-Polymers* | Number of molecules | 511 |
| Total formula weight | 20574.7 | |
| All* | Total formula weight | 3199960.8 |
