9H6I
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
| site_id | PS00049 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L14 Ribosomal protein L14 signature. AVIVrqrkpwrrk.DGvfmyFedNagVI |
| Chain | Residue | Details |
| BI | ALA79-ILE105 |
| site_id | PS00050 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVRLTpdydaldV |
| Chain | Residue | Details |
| BN | LYS132-VAL147 |
| site_id | PS00051 |
| Number of Residues | 17 |
| Details | RIBOSOMAL_L39E Ribosomal protein L39e signature. RTdntIryNakrRHWRR |
| Chain | Residue | Details |
| BA | ARG30-ARG46 |
| site_id | PS00052 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsLMmhgrnnGKKlmavrIVkhA |
| Chain | Residue | Details |
| AD | GLU70-ALA96 |
| site_id | PS00053 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GyiVLTTSaGIMdheeAR |
| Chain | Residue | Details |
| AE | GLY100-ARG117 |
| site_id | PS00054 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GMkIgrieDvTPiPTD |
| Chain | Residue | Details |
| Ua | LEU115-ASP137 |
| site_id | PS00055 |
| Number of Residues | 8 |
| Details | RIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR |
| Chain | Residue | Details |
| Va | LYS59-ARG66 |
| site_id | PS00056 |
| Number of Residues | 13 |
| Details | RIBOSOMAL_S17 Ribosomal protein S17 signature. GDhIiIgQcRPLS |
| Chain | Residue | Details |
| Xa | GLY121-SER133 |
| site_id | PS00299 |
| Number of Residues | 26 |
| Details | UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD |
| Chain | Residue | Details |
| Ga | LYS27-ASP52 |
| site_id | PS00323 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKtfnqveIkpemIGhyLAEFsiS |
| Chain | Residue | Details |
| Ya | ASN103-SER127 |
| site_id | PS00358 |
| Number of Residues | 17 |
| Details | RIBOSOMAL_L5 Ribosomal protein L5 signature. LeqLSGQtpVfSkARyT |
| Chain | Residue | Details |
| BU | LEU39-THR55 |
| site_id | PS00360 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhtSQvyAirqSiAKAL |
| Chain | Residue | Details |
| AF | GLY73-LEU91 |
| site_id | PS00361 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_S10 Ribosomal protein S10 signature. AkdkRLrvkGPVrMPT |
| Chain | Residue | Details |
| Ba | ALA46-THR61 |
| site_id | PS00362 |
| Number of Residues | 31 |
| Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. IrkHLernRkDkdSkfrLilVesrihrLarY |
| Chain | Residue | Details |
| Da | ILE98-TYR128 |
| site_id | PS00464 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinpymsnpCHIELiL |
| Chain | Residue | Details |
| BM | ARG127-LEU151 |
| site_id | PS00467 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L2 Ribosomal protein L2 signature. PkvRGVAmNPvE |
| Chain | Residue | Details |
| BQ | PRO197-GLU208 |
| site_id | PS00474 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L3 Ribosomal protein L3 signature. FqkdemiDiiGvTkGKGyeGvvtR |
| Chain | Residue | Details |
| BS | PHE212-ARG235 |
| site_id | PS00475 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGkGhLpenkpFvVkaklISktAekkIkeaG |
| Chain | Residue | Details |
| Ha | LYS107-GLY139 |
| site_id | PS00526 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L19E Ribosomal protein L19e signature. QKRLaAsvmkCGkgkVWLDP |
| Chain | Residue | Details |
| AK | GLN7-PRO26 |
| site_id | PS00528 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLNaPkhWmLdK |
| Chain | Residue | Details |
| Ja | HIS8-LYS22 |
| site_id | PS00529 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_S24E Ribosomal protein S24e signature. FGggKSsGYGlIYDTvenakkfE |
| Chain | Residue | Details |
| Ka | PHE66-GLU88 |
| site_id | PS00578 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_S6E Ribosomal protein S6e signature. IMGGcDkqGfPM |
| Chain | Residue | Details |
| Ta | ILE52-MET63 |
| site_id | PS00579 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L29 Ribosomal protein L29 signature. KLSKIKvVRKSIAQV |
| Chain | Residue | Details |
| BP | LYS43-VAL57 |
| site_id | PS00580 |
| Number of Residues | 21 |
| Details | RIBOSOMAL_L32E Ribosomal protein L32e signature. FiRpqsdRriTVkes..WRRpkG |
| Chain | Residue | Details |
| AV | PHE18-GLY38 |
| site_id | PS00585 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GQrtrFkAfvVVGDgn.GhVGlGvkcsk.EVat.AI |
| Chain | Residue | Details |
| AC | GLY65-ILE97 |
| site_id | PS00628 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_S19E Ribosomal protein S19e signature. PphfcksSggVaRhILQqLQ |
| Chain | Residue | Details |
| BL | PRO90-GLN109 |
| site_id | PS00632 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtiVFKsgmAkSihhARvLI |
| Chain | Residue | Details |
| AB | LEU107-ILE131 |
| site_id | PS00634 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_L30 Ribosomal protein L30 signature. ILqlLrLrQifNgVflkvnkatvnMLrrVepYV |
| Chain | Residue | Details |
| BR | ILE107-VAL139 |
| site_id | PS00646 |
| Number of Residues | 14 |
| Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHywGlrVRGQ |
| Chain | Residue | Details |
| Wa | ARG121-GLN134 |
| site_id | PS00700 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QkchVkkKdiRkFlDGIYVseK |
| Chain | Residue | Details |
| Ia | GLN166-LYS187 |
| site_id | PS00709 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_L30E_1 Ribosomal protein L30e signature 1. SgkytlGyKsvLKslRgSkgKlILI |
| Chain | Residue | Details |
| AT | SER23-ILE47 |
| site_id | PS00712 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_S17E Ribosomal protein S17e signature. IpSKrLRNkIAGFsTH |
| Chain | Residue | Details |
| BB | ILE41-HIS56 |
| site_id | PS00733 |
| Number of Residues | 8 |
| Details | RIBOSOMAL_S26E Ribosomal protein S26e signature. YCVSCAIH |
| Chain | Residue | Details |
| Ma | TYR73-HIS80 |
| site_id | PS00783 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L13 Ribosomal protein L13 signature. VRGMIPhktkrGAaalarLkVFeG |
| Chain | Residue | Details |
| BH | VAL89-GLY112 |
| site_id | PS00939 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L1E Ribosomal protein L1e signature. NvnmKrhAIvSAIaATAvpalvmaRGH |
| Chain | Residue | Details |
| BT | ASN121-HIS147 |
| site_id | PS00948 |
| Number of Residues | 14 |
| Details | RIBOSOMAL_S7E Ribosomal protein S7e signature. RLvRELEKKFSgKD |
| Chain | Residue | Details |
| Ra | ARG79-ASP92 |
| site_id | PS00961 |
| Number of Residues | 9 |
| Details | RIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL |
| Chain | Residue | Details |
| Oa | GLU55-LEU63 |
| site_id | PS00962 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VrMMCAAEVHLG |
| Chain | Residue | Details |
| Za | VAL19-GLY30 |
| site_id | PS00963 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrlLILtDprtDhqpIkEgalgNIP |
| Chain | Residue | Details |
| Za | PRO123-PRO147 |
| site_id | PS00993 |
| Number of Residues | 21 |
| Details | RIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. DLGTacGKyfrvscLsIvDpG |
| Chain | Residue | Details |
| AT | ASP79-GLY99 |
| site_id | PS00996 |
| Number of Residues | 9 |
| Details | RIBOSOMAL_S21E Ribosomal protein S21e signature. LYIPRKCSA |
| Chain | Residue | Details |
| BW | LEU11-ALA19 |
| site_id | PS01073 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L24E Ribosomal protein L24e signature. FsGqkIyPGrGirFiRsD |
| Chain | Residue | Details |
| AO | PHE10-ASP27 |
| site_id | PS01077 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L37E Ribosomal protein L37e signature. GTgSfGkRrnks.HtlCvRCG |
| Chain | Residue | Details |
| AY | GLY4-GLY23 |
| site_id | PS01082 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CrkmeVPYciVkGKsrLG |
| Chain | Residue | Details |
| BG | CYS164-GLY181 |
| site_id | PS01104 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L13E Ribosomal protein L13e signature. RtGKGFTLeELkaaG |
| Chain | Residue | Details |
| AG | ARG69-GLY83 |
| site_id | PS01105 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKVtRpHGnsGvVrAkFtsnLP |
| Chain | Residue | Details |
| AW | GLY74-PRO95 |
| site_id | PS01107 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L27E Ribosomal protein L27e signature. GKNrWFFtkLRF |
| Chain | Residue | Details |
| AP | GLY124-PHE135 |
| site_id | PS01108 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeVqIVrGtyKGre.GkV |
| Chain | Residue | Details |
| BO | ASP52-VAL69 |
| site_id | PS01144 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L31E Ribosomal protein L31e signature. VRVDvkLNkQiWsKG |
| Chain | Residue | Details |
| AU | VAL53-GLY67 |
| site_id | PS01145 |
| Number of Residues | 14 |
| Details | RIBOSOMAL_L34E Ribosomal protein L34e signature. TkSnQhrivKTPGG |
| Chain | Residue | Details |
| Fa | THR15-GLY28 |
| site_id | PS01168 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_S27E Ribosomal protein S27e signature. KCqgCfnittvFShSqtvvvCgnCQtiLcqPtG |
| Chain | Residue | Details |
| Na | LYS38-GLY70 |
| site_id | PS01171 |
| Number of Residues | 26 |
| Details | RIBOSOMAL_L21E Ribosomal protein L21e signature. GDyVdvkvngaihk.GmpHkfYhGrTG |
| Chain | Residue | Details |
| AM | GLY37-GLY62 |
| site_id | PS01172 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKivLRlqC |
| Chain | Residue | Details |
| BD | LYS63-CYS74 |
| site_id | PS01190 |
| Number of Residues | 11 |
| Details | RIBOSOMAL_L36E Ribosomal protein L36e signature. PYEKRiTELLK |
| Chain | Residue | Details |
| AX | PRO55-LYS65 |
| site_id | PS01191 |
| Number of Residues | 13 |
| Details | RIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkHRVfEvSLaDL |
| Chain | Residue | Details |
| BV | LEU61-LEU73 |
| site_id | PS01193 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_S8E Ribosomal protein S8e signature. RraTGGkqkqw.RkKrKyEMG |
| Chain | Residue | Details |
| Aa | ARG11-GLY30 |
| site_id | PS01194 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGFVVYRvRVrRG |
| Chain | Residue | Details |
| Ea | ASP46-GLY69 |
| site_id | PS01257 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqtGMRgAFGKAlGtcARV |
| Chain | Residue | Details |
| BJ | ALA108-VAL129 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 262 |
| Details | Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 194 |
| Details | Compositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"22092075","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 62 |
| Details | Domain: {"description":"S4 RNA-binding"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 11 |
| Details | Compositional bias: {"description":"Polar residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Hydroxyproline","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 63 |
| Details | Domain: {"description":"S5 DRBM","evidences":[{"source":"PROSITE-ProRule","id":"PRU00268","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 19 |
| Details | Compositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 40 |
| Details | Zinc finger: {"description":"C4-type","evidences":[{"evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 71 |
| Details | Domain: {"description":"KH type-2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00118","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI13 |
| Number of Residues | 21 |
| Details | Zinc finger: {"description":"C4-type"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI14 |
| Number of Residues | 33 |
| Details | Coiled coil: {"evidences":[{"evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI15 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI16 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
