9H0B
Crystal structure of the Porcine Hemagglutinating Encephalomyelitis Virus (PHEV) receptor binding domain in complex with porcine DPEP1.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C (B, C) | Dipeptidase 1 | polymer | 374 | 41030.0 | 2 | UniProt (P22412) Pfam (PF01244) | Sus scrofa (pig) | Beta-lactamase,Microsomal dipeptidase,Renal dipeptidase |
2 | B, D (A, D) | Spike glycoprotein | polymer | 284 | 31128.8 | 2 | UniProt (Q2QKN3) Pfam (PF09408) | Porcine hemagglutinating encephalomyelitis virus | S glycoprotein,E2,Peplomer protein |
3 | E, F, G, H (E, F, G, H) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 4 | In PDB GlyTouCan (G21290RB) | |||
4 | AA, BA, I, J, K... (D, B, C) | ZINC ION | non-polymer | 65.4 | 16 | Chemie (ZN) | |||
5 | R, S, Y, Z (A, D) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) | |||
6 | CA, DA, EA, FA (B, A, C, D) | water | water | 18.0 | 506 | Chemie (HOH) |
Sequence modifications
B, C: 17 - 385 (UniProt: P22412)
A, D: 327 - 605 (UniProt: Q2QKN3)
PDB | External Database | Details |
---|---|---|
Asp 386 | - | expression tag |
Asp 387 | - | expression tag |
Asp 388 | - | expression tag |
Asp 389 | - | expression tag |
Lys 390 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Asp 606 | - | expression tag |
Asp 607 | - | expression tag |
Asp 608 | - | expression tag |
Asp 609 | - | expression tag |
Lys 610 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 144317.5 | |
Branched | Number of molecules | 4 |
Total formula weight | 2282.2 | |
Non-Polymers* | Number of molecules | 20 |
Total formula weight | 1931.4 | |
All* | Total formula weight | 148531.0 |