9GV9
Structure of Heparinase I from Bacteroides eggerthii in complex with calcium cofactor and delta-UA(1-4)Glc 3, 6, N-Sulphated disaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (B, A) | Heparin lyase I | polymer | 382 | 43574.3 | 2 | UniProt (E5WZ15) | Bacteroides eggerthii | |
| 2 | C, D (E, G) | 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose | branched | 577.5 | 2 | In PDB | |||
| 3 | E, F, G, H, Q... (B, A) | ACETATE ION | non-polymer | 59.0 | 6 | Chemie (ACT) PubChem (175) | |||
| 4 | I, J, K, L, M... (B, A) | SULFATE ION | non-polymer | 96.1 | 15 | Chemie (SO4) | |||
| 5 | AA, P (A, B) | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) PubChem (271) | |||
| 6 | BA, CA (B, A) | water | water | 18.0 | 578 | Chemie (HOH) |
Sequence modifications
B, A: 2 - 374 (UniProt: E5WZ15)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| Leu 375 | - | expression tag |
| Glu 376 | - | expression tag |
| His 377 | - | expression tag |
| His 378 | - | expression tag |
| His 379 | - | expression tag |
| His 380 | - | expression tag |
| His 381 | - | expression tag |
| His 382 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 87148.7 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1154.9 | |
| Non-Polymers* | Number of molecules | 23 |
| Total formula weight | 1875.4 | |
| All* | Total formula weight | 90179.0 |






