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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9GRX

NDH-PSI-LHCI supercomplex from S. oleracea

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(0)		Photosynthetic NDH subunit of lumenal location 1, chloroplasticpolymer15718606.81UniProt (A0A9R0JJI5)
Pfam (PF01789)		Spinacia oleracea (spinach)
2B
(1)		Photosynthetic NDH subunit of subcomplex B 1, chloroplasticpolymer40344622.61UniProt (A0A9R0JDZ5)Spinacia oleracea (spinach)
3C
(2)		Photosynthetic NDH subunit of subcomplex B 2, chloroplasticpolymer37240259.51UniProt (A0A9R0KAG7)Spinacia oleracea (spinach)
4D
(3)		Photosynthetic NDH subunit of subcomplex B 3, chloroplasticpolymer13915614.81UniProt (A0A9R0J911)
Pfam (PF00111)		Spinacia oleracea (spinach)
5E
(4)		Photosynthetic NDH subunit of subcomplex B 4, chloroplasticpolymer9310763.01UniProt (A0A9R0J426)Spinacia oleracea (spinach)
6F
(5)		Photosynthetic NDH subunit of subcomplex B 5, chloroplasticpolymer15417772.71UniProt (A0A9R0JS52)Spinacia oleracea (spinach)
7G
(6)		Photosynthetic NDH subunit of lumenal location 2, chloroplasticpolymer12514876.01UniProt (A0A9R0I5E4)
Pfam (PF05757)		Spinacia oleracea (spinach)
8H
(7)		Photosynthetic NDH subunit of lumenal location 3, chloroplasticpolymer14416452.01UniProt (A0A9R0JBH0)
Pfam (PF05757)		Spinacia oleracea (spinach)
9I
(8)		peptidylprolyl isomerasepolymer14315352.51UniProt (A0A9R0IC28)
Pfam (PF00254)		Spinacia oleracea (spinach)
10J
(9)		Peptidyl-prolyl cis-trans isomerasepolymer17418900.41UniProt (A0A9R0IB03)
Pfam (PF00160)		Spinacia oleracea (spinach)PPIase
11K
(A)		NAD(P)H-quinone oxidoreductase subunit 1, chloroplasticpolymer35038985.61UniProt (Q9M3I6)
Pfam (PF00146)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase subunit 1,NDH subunit 1,NADH-plastoquinone oxidoreductase subunit 1
12L
(B)		NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplasticpolymer48854026.11UniProt (P0CD52)
Pfam (PF19530)
Pfam (PF00361)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase,subunit 2 A,NADH-plastoquinone oxidoreductase subunit 2 A
13M
(C)		NAD(P)H-quinone oxidoreductase subunit 3, chloroplasticpolymer11513270.71UniProt (Q9M3L9)
Pfam (PF00507)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase subunit 3,NADH-plastoquinone oxidoreductase subunit 3
14N
(D)		NAD(P)H-quinone oxidoreductase chain 4, chloroplasticpolymer49855980.21UniProt (Q9M3J0)
Pfam (PF00361)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase,chain 4,NADH-plastoquinone oxidoreductase chain 4
15O
(E)		NAD(P)H-quinone oxidoreductase subunit 4L, chloroplasticpolymer10011085.01UniProt (Q9M3I9)
Pfam (PF00420)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase subunit 4L,NADH-plastoquinone oxidoreductase subunit 4L
16P
(F)		NAD(P)H-quinone oxidoreductase subunit 5, chloroplasticpolymer74284590.11UniProt (Q9M3J4)
Pfam (PF00662)
Pfam (PF00361)
Pfam (PF01010)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase subunit 5,NADH-plastoquinone oxidoreductase subunit 5
17Q
(G)		NAD(P)H-quinone oxidoreductase subunit 6, chloroplasticpolymer17619193.71UniProt (Q9M3I8)
Pfam (PF00499)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase subunit 6,NADH-plastoquinone oxidoreductase subunit 6
18R
(H)		NAD(P)H-quinone oxidoreductase subunit H, chloroplasticpolymer38945172.31UniProt (Q9M3I5)
Pfam (PF00346)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase subunit H,NADH-plastoquinone oxidoreductase 49 kDa subunit,NADH-plastoquinone oxidoreductase subunit H
19S
(I)		NAD(P)H-quinone oxidoreductase subunit I, chloroplasticpolymer16319004.91UniProt (Q9M3I7)
Pfam (PF13187)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase subunit I,NDH subunit I,NADH-plastoquinone oxidoreductase subunit I
20T
(J)		NAD(P)H-quinone oxidoreductase subunit J, chloroplasticpolymer15818687.31UniProt (Q9M3M1)
Pfam (PF00329)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase subunit J,NADH-plastoquinone oxidoreductase subunit J
21U
(K)		NAD(P)H-quinone oxidoreductase subunit K, chloroplasticpolymer20222789.41UniProt (Q9M3M0)
Pfam (PF01058)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase subunit K,NADH-plastoquinone oxidoreductase subunit K
22V
(L)		NAD(P)H-quinone oxidoreductase subunit L, chloroplasticpolymer10913194.61UniProt (A0A9R0JHB5)
Pfam (PF10716)		Spinacia oleracea (spinach)
23W
(M)		NAD(P)H-quinone oxidoreductase subunit M, chloroplasticpolymer14116702.11UniProt (A0A9R0JNY9)
Pfam (PF10664)		Spinacia oleracea (spinach)NAD(P)H dehydrogenase subunit M,NADH-plastoquinone oxidoreductase subunit M
24X
(N)		NAD(P)H-quinone oxidoreductase subunit N, chloroplasticpolymer16518727.81UniProt (A0A9R0J7P2)
Pfam (PF11909)		Spinacia oleracea (spinach)
25Y
(O)		NAD(P)H-quinone oxidoreductase subunit O, chloroplasticpolymer9511127.81UniProt (A0A9R0K504)
Pfam (PF11910)		Spinacia oleracea (spinach)
26Z
(U)		NAD(P)H-quinone oxidoreductase subunit U, chloroplasticpolymer24027127.31UniProt (A0A9R0K267)Spinacia oleracea (spinach)
27AA
(a)		Photosystem I P700 chlorophyll a apoprotein A1polymer74282145.01UniProt (P06511)
Pfam (PF00223)		Spinacia oleracea (spinach)PSI-A,PsaA
28BA
(b)		Photosystem I P700 chlorophyll a apoprotein A2polymer73382377.51UniProt (P06512)
Pfam (PF00223)		Spinacia oleracea (spinach)PSI-B,PsaB
29CA
(c)		Photosystem I iron-sulfur centerpolymer819035.51UniProt (P10098)
Pfam (PF14697)		Spinacia oleracea (spinach)9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC
30DA
(d)		Photosystem I reaction center subunit II, chloroplasticpolymer14316053.51UniProt (P12353)
Pfam (PF02531)		Spinacia oleracea (spinach)Photosystem I 20 kDa subunit,PSI-D
31EA
(e)		Photosystem I reaction center subunit IV, chloroplasticpolymer687736.91UniProt (P12354)
Pfam (PF02427)		Spinacia oleracea (spinach)PSI-E
32FA
(f)		Photosystem I reaction center subunit III, chloroplasticpolymer15317151.91UniProt (P12355)
Pfam (PF02507)		Spinacia oleracea (spinach)Light-harvesting complex I 17 kDa protein,PSI-F
33GA
(g)		Photosystem I reaction center subunit V, chloroplasticpolymer9710719.11UniProt (P12357)
Pfam (PF01241)		Spinacia oleracea (spinach)PSI-G,Photosystem I 9 kDa protein
34HA
(h)		Photosystem I reaction center subunit VI, chloroplasticpolymer9510391.81UniProt (P22179)
Pfam (PF03244)		Spinacia oleracea (spinach)PSI-H,Light-harvesting complex I 11 kDa protein
35IA
(i)		Photosystem I reaction center subunit VIIIpolymer313458.21UniProt (P17228)
Pfam (PF00796)		Spinacia oleracea (spinach)PSI-I
36JA
(j)		Photosystem I reaction center subunit IXpolymer424845.71UniProt (A0A6B9Q8A1)Spinacia oleracea (spinach)PSI-J
37KA
(k)		PSI-Kpolymer13013229.41UniProt (A0A9R0IBB5)
Pfam (PF01241)		Spinacia oleracea (spinach)Photosystem I subunit X
38LA
(l)		Photosystem I reaction center subunit XI, chloroplasticpolymer16016988.71UniProt (Q41385)
Pfam (PF02605)		Spinacia oleracea (spinach)PSI-L,PSI subunit V
39MA
(w)		Chlorophyll a-b binding protein, chloroplasticpolymer21523947.31UniProt (A0A9R0JIF6)
Pfam (PF00504)		Spinacia oleracea (spinach)
40NA
(x)		Chlorophyll a-b binding protein, chloroplasticpolymer19822135.11UniProt (A0A9R0J335)
Pfam (PF00504)		Spinacia oleracea (spinach)
41OA
(y)		Chlorophyll a-b binding protein, chloroplasticpolymer22124168.61UniProt (A0A9R0IPK6)
Pfam (PF00504)		Spinacia oleracea (spinach)
42PA
(z)		Chlorophyll a-b binding protein, chloroplasticpolymer19321184.21UniProt (A0A9R0J8B1)
Pfam (PF00504)		Spinacia oleracea (spinach)
43AH, AK, BH, CC, EF...
(l, z, a, b, f...)		BETA-CAROTENEnon-polymer536.929Chemie (BCR)
PubChem (573)
PubChem (21672398)
PubChem (176490061)
PubChem (177696266)
PubChem (46783370)
PubChem (46846294)
PubChem (54603957)
PubChem (54612003)
PubChem (86765360)
PubChem (5315709)
PubChem (5280489)
PubChem (91827292)
PubChem (92863345)
PubChem (5353436)
PubChem (5356616)
PubChem (5927371)
PubChem (124919640)
PubChem (92863346)
PubChem (92863347)
PubChem (92863348)
PubChem (6477957)
PubChem (100990628)
PubChem (101525094)
PubChem (101525095)
PubChem (9828626)
PubChem (10256668)
PubChem (12305639)
PubChem (12305640)
PubChem (12305642)
PubChem (12305644)
PubChem (12305647)
PubChem (12305652)
PubChem (146673260)
PubChem (152743364)
PubChem (124919639)
PubChem (160505766)
PubChem (129651951)
PubChem (132274419)
PubChem (145925599)
PubChem (159562859)
PubChem (172654026)
PubChem (172878405)
PubChem (173398668)
44AB, BB, CF, DF, EB...
(B, b, f, D, F...)		(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATEnon-polymer751.024Chemie (PGT)
PubChem (25267633)
PubChem (449008)
PubChem (102447212)
PubChem (16040248)
PubChem (172432040)
45KB, SA
(F, 5)		4-trans-(4-trans-Propylcyclohexyl)-cyclohexyl alpha-maltosidenon-polymer548.72Chemie (A1H1M)
PubChem (102527062)
PubChem (172653961)
46DB, FB, GG, IB, MB...
(B, D, f, F, H...)		1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDEnon-polymer787.212Chemie (LMG)
47YA
(A)		5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONEnon-polymer613.01Chemie (PQ9)
PubChem (5459388)
48CB, HB, LB, SG, UH...
(B, F, j, w, a)		1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLnon-polymer795.17Chemie (SQD)
PubChem (25147486)
PubChem (25235342)
PubChem (42607399)
PubChem (159321)
PubChem (481096)
PubChem (5459390)
PubChem (102201395)
PubChem (134765349)
PubChem (9810997)
PubChem (9918745)
PubChem (10219110)
PubChem (10373133)
PubChem (14463145)
49AG, NB, OB, QB, YC...
(c, I, K, a)		IRON/SULFUR CLUSTERnon-polymer351.66Chemie (SF4)
50AD, AE, AI, AJ, BC...
(a, b, x, y, f...)		CHLOROPHYLL Anon-polymer893.5144Chemie (CLA)
51OI, UE, WB
(x, b, a)		DIGALACTOSYL DIACYL GLYCEROL (DGDG)non-polymer949.33Chemie (DGD)
PubChem (24865462)
PubChem (24865463)
PubChem (50904896)
PubChem (53480668)
PubChem (46936671)
PubChem (448441)
PubChem (447899)
PubChem (4629344)
PubChem (15991538)
PubChem (154573294)
PubChem (171123158)
PubChem (134746152)
PubChem (140529801)
52AC
(a)		CHLOROPHYLL A ISOMERnon-polymer893.51Chemie (CL0)
53AF, RC
(b, a)		PHYLLOQUINONEnon-polymer450.72Chemie (PQN)
PubChem (4812)
PubChem (21896458)
PubChem (57138572)
PubChem (5315258)
PubChem (5280483)
PubChem (5284607)
PubChem (7048754)
PubChem (92436622)
PubChem (93233163)
PubChem (93971968)
PubChem (133612476)
PubChem (7048753)
PubChem (7048755)
PubChem (9846607)
PubChem (162999945)
54CI, HH, II, MH, MJ...
(x, w, z)		CHLOROPHYLL Bnon-polymer907.59Chemie (CHL)
55CK, DK, HJ, IJ, RI...
(z, y, x, w)		(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOLnon-polymer568.98Chemie (LUT)
PubChem (24728610)
PubChem (177565809)
PubChem (25202165)
PubChem (177696530)
PubChem (44481270)
PubChem (46835684)
PubChem (25245095)
PubChem (53477744)
PubChem (53477774)
PubChem (181579)
PubChem (441664)
PubChem (53477760)
PubChem (57922343)
PubChem (31380)
PubChem (90820720)
PubChem (448437)
PubChem (89305995)
PubChem (91240120)
PubChem (91519940)
PubChem (91007743)
PubChem (91330154)
PubChem (91467158)
PubChem (5281243)
PubChem (93535598)
PubChem (94424894)
PubChem (100935514)
PubChem (101351907)
PubChem (101351906)
PubChem (5368396)
PubChem (6325550)
PubChem (6433159)
PubChem (93971688)
PubChem (93971689)
PubChem (93971690)
PubChem (93971691)
PubChem (94424892)
PubChem (94424893)
PubChem (131801656)
PubChem (101351905)
PubChem (101351908)
PubChem (101351909)
PubChem (101351910)
PubChem (101727094)
PubChem (102093134)
PubChem (102514741)
PubChem (12085680)
PubChem (10210008)
PubChem (10257404)
PubChem (139335388)
PubChem (12359017)
PubChem (16061195)
PubChem (16061196)
PubChem (16061204)
PubChem (162679657)
PubChem (162945700)
PubChem (162945708)
PubChem (125183271)
PubChem (125183272)
PubChem (125183273)
PubChem (125183613)
PubChem (125183614)
PubChem (126970006)
PubChem (175679236)
PubChem (175679086)
PubChem (131801655)
PubChem (139595700)
PubChem (152743345)
PubChem (156583347)
PubChem (159139983)
PubChem (162945701)
PubChem (162945702)
PubChem (162945703)
PubChem (162945704)
PubChem (162945705)
PubChem (162945706)
PubChem (162945707)
PubChem (162945709)
PubChem (169423521)
PubChem (169954357)
PubChem (172748694)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains42
Total formula weight1048453.4
Non-Polymers*Number of molecules248
Total formula weight198449.1
All*Total formula weight1246902.5
*Water molecules are not included.

253389

PDB entries from 2026-05-13

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