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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9GRX

NDH-PSI-LHCI supercomplex from S. oleracea

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
00005509molecular_functioncalcium ion binding
00009523cellular_componentphotosystem II
00009654cellular_componentphotosystem II oxygen evolving complex
00015979biological_processphotosynthesis
00019898cellular_componentextrinsic component of membrane
10009507cellular_componentchloroplast
10009773biological_processphotosynthetic electron transport in photosystem I
10010598cellular_componentNAD(P)H dehydrogenase complex (plastoquinone)
20005737cellular_componentcytoplasm
20005975biological_processcarbohydrate metabolic process
20030246molecular_functioncarbohydrate binding
20047938molecular_functionglucose-6-phosphate 1-epimerase activity
30051536molecular_functioniron-sulfur cluster binding
30051537molecular_function2 iron, 2 sulfur cluster binding
30140647biological_processP450-containing electron transport chain
40009535cellular_componentchloroplast thylakoid membrane
40009773biological_processphotosynthetic electron transport in photosystem I
40010598cellular_componentNAD(P)H dehydrogenase complex (plastoquinone)
50006979biological_processresponse to oxidative stress
50009507cellular_componentchloroplast
60005509molecular_functioncalcium ion binding
60009523cellular_componentphotosystem II
60009654cellular_componentphotosystem II oxygen evolving complex
60015979biological_processphotosynthesis
60019898cellular_componentextrinsic component of membrane
70005509molecular_functioncalcium ion binding
70009523cellular_componentphotosystem II
70009654cellular_componentphotosystem II oxygen evolving complex
70015979biological_processphotosynthesis
70019898cellular_componentextrinsic component of membrane
80003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
80009507cellular_componentchloroplast
90000413biological_processprotein peptidyl-prolyl isomerization
90003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
90006457biological_processprotein folding
a0000287molecular_functionmagnesium ion binding
a0009055molecular_functionelectron transfer activity
a0009535cellular_componentchloroplast thylakoid membrane
a0009579cellular_componentthylakoid
a0015979biological_processphotosynthesis
a0016020cellular_componentmembrane
a0046872molecular_functionmetal ion binding
A0003954molecular_functionNADH dehydrogenase activity
A0009060biological_processaerobic respiration
A0009535cellular_componentchloroplast thylakoid membrane
A0016020cellular_componentmembrane
A0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
A0019684biological_processphotosynthesis, light reaction
b0000287molecular_functionmagnesium ion binding
b0009055molecular_functionelectron transfer activity
b0009522cellular_componentphotosystem I
b0009535cellular_componentchloroplast thylakoid membrane
b0009579cellular_componentthylakoid
b0015979biological_processphotosynthesis
b0016020cellular_componentmembrane
B0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
B0009535cellular_componentchloroplast thylakoid membrane
B0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
B0019684biological_processphotosynthesis, light reaction
B0022904biological_processrespiratory electron transport chain
B0042773biological_processATP synthesis coupled electron transport
B0045271cellular_componentrespiratory chain complex I
B1902600biological_processproton transmembrane transport
c0009055molecular_functionelectron transfer activity
c0009522cellular_componentphotosystem I
c0009534cellular_componentchloroplast thylakoid
c0009535cellular_componentchloroplast thylakoid membrane
c0009773biological_processphotosynthetic electron transport in photosystem I
c0015979biological_processphotosynthesis
c0042651cellular_componentthylakoid membrane
c0051539molecular_function4 iron, 4 sulfur cluster binding
C0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
C0009507cellular_componentchloroplast
C0009535cellular_componentchloroplast thylakoid membrane
C0016651molecular_functionoxidoreductase activity, acting on NAD(P)H
C0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
C0019684biological_processphotosynthesis, light reaction
C0030964cellular_componentNADH dehydrogenase complex
C1902600biological_processproton transmembrane transport
d0009522cellular_componentphotosystem I
d0009538cellular_componentphotosystem I reaction center
d0015979biological_processphotosynthesis
D0003954molecular_functionNADH dehydrogenase activity
D0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
D0009060biological_processaerobic respiration
D0009507cellular_componentchloroplast
D0009535cellular_componentchloroplast thylakoid membrane
D0015990biological_processelectron transport coupled proton transport
D0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
D0042773biological_processATP synthesis coupled electron transport
D0048039molecular_functionubiquinone binding
e0009522cellular_componentphotosystem I
e0009538cellular_componentphotosystem I reaction center
e0015979biological_processphotosynthesis
E0009535cellular_componentchloroplast thylakoid membrane
E0009536cellular_componentplastid
E0016651molecular_functionoxidoreductase activity, acting on NAD(P)H
E0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
E0019684biological_processphotosynthesis, light reaction
E0030964cellular_componentNADH dehydrogenase complex
E0042773biological_processATP synthesis coupled electron transport
f0009522cellular_componentphotosystem I
f0009538cellular_componentphotosystem I reaction center
f0015979biological_processphotosynthesis
F0003954molecular_functionNADH dehydrogenase activity
F0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
F0009507cellular_componentchloroplast
F0009535cellular_componentchloroplast thylakoid membrane
F0015990biological_processelectron transport coupled proton transport
F0042773biological_processATP synthesis coupled electron transport
g0009522cellular_componentphotosystem I
g0009535cellular_componentchloroplast thylakoid membrane
g0015979biological_processphotosynthesis
g0016020cellular_componentmembrane
G0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
G0009535cellular_componentchloroplast thylakoid membrane
G1902600biological_processproton transmembrane transport
h0009522cellular_componentphotosystem I
h0009538cellular_componentphotosystem I reaction center
h0015979biological_processphotosynthesis
H0009535cellular_componentchloroplast thylakoid membrane
H0016651molecular_functionoxidoreductase activity, acting on NAD(P)H
H0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
H0019684biological_processphotosynthesis, light reaction
H0048038molecular_functionquinone binding
H0051287molecular_functionNAD binding
i0009522cellular_componentphotosystem I
i0009535cellular_componentchloroplast thylakoid membrane
i0015979biological_processphotosynthesis
I0005506molecular_functioniron ion binding
I0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
I0009535cellular_componentchloroplast thylakoid membrane
I0016020cellular_componentmembrane
I0016651molecular_functionoxidoreductase activity, acting on NAD(P)H
I0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
I0019684biological_processphotosynthesis, light reaction
I0051539molecular_function4 iron, 4 sulfur cluster binding
I1902600biological_processproton transmembrane transport
j0009522cellular_componentphotosystem I
j0009535cellular_componentchloroplast thylakoid membrane
j0009536cellular_componentplastid
j0015979biological_processphotosynthesis
J0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
J0009535cellular_componentchloroplast thylakoid membrane
J0016651molecular_functionoxidoreductase activity, acting on NAD(P)H
J0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
J0019684biological_processphotosynthesis, light reaction
J1902600biological_processproton transmembrane transport
k0009522cellular_componentphotosystem I
k0009535cellular_componentchloroplast thylakoid membrane
k0009773biological_processphotosynthetic electron transport in photosystem I
k0009780biological_processphotosynthetic NADP+ reduction
k0015979biological_processphotosynthesis
k0016020cellular_componentmembrane
k0030093cellular_componentchloroplast photosystem I
K0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
K0048038molecular_functionquinone binding
K0051536molecular_functioniron-sulfur cluster binding
K0051539molecular_function4 iron, 4 sulfur cluster binding
l0009522cellular_componentphotosystem I
l0009538cellular_componentphotosystem I reaction center
l0015979biological_processphotosynthesis
L0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
M0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
N0016020cellular_componentmembrane
N0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
O0005886cellular_componentplasma membrane
O0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
U0009507cellular_componentchloroplast
U0009535cellular_componentchloroplast thylakoid membrane
U0010598cellular_componentNAD(P)H dehydrogenase complex (plastoquinone)
w0009765biological_processphotosynthesis, light harvesting
w0016020cellular_componentmembrane
x0009765biological_processphotosynthesis, light harvesting
x0016020cellular_componentmembrane
y0009765biological_processphotosynthesis, light harvesting
y0016020cellular_componentmembrane
z0009765biological_processphotosynthesis, light harvesting
z0016020cellular_componentmembrane
Functional Information from PROSITE/UniProt
site_idPS00170
Number of Residues18
DetailsCSA_PPIASE_1 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. YkgSaFHRVIkdFMiQGG
ChainResidueDetails
9TYR134-GLY151
site_idPS00198
Number of Residues12
Details4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CiACEvCVrACP
ChainResidueDetails
ICYS64-PRO75
ICYS104-PRO115
cCYS11-PRO22
cCYS48-PRO59
site_idPS00419
Number of Residues10
DetailsPHOTOSYSTEM_I_PSAAB Photosystem I psaA and psaB proteins signature. CDGPGRGGTC
ChainResidueDetails
bCYS559-CYS568
aCYS573-CYS582
site_idPS00535
Number of Residues12
DetailsCOMPLEX1_49K Respiratory chain NADH dehydrogenase 49 Kd subunit signature. LHRGmEKIaEnR
ChainResidueDetails
HLEU47-ARG58
site_idPS00542
Number of Residues22
DetailsCOMPLEX1_30K Respiratory chain NADH dehydrogenase 30 Kd subunit signature. EREsyDMFgisydnHprlKrIL
ChainResidueDetails
JGLU111-LEU132
site_idPS00667
Number of Residues16
DetailsCOMPLEX1_ND1_1 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. GILQaLaDGTKLLfKE
ChainResidueDetails
AGLY73-GLU88
site_idPS00668
Number of Residues14
DetailsCOMPLEX1_ND1_2 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. PFDLPEAEeeLVa.G
ChainResidueDetails
APRO232-GLY245
site_idPS01026
Number of Residues18
DetailsPHOTOSYSTEM_I_PSAGK Photosystem I psaG and psaK proteins signature. GFnIvDvlAwGSiGHiVA
ChainResidueDetails
gGLY134-ALA151
kGLY100-GLY117
site_idPS01150
Number of Residues17
DetailsCOMPLEX1_20K Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. GvDKLIPVDVYlPgCPP
ChainResidueDetails
KGLY125-PRO141
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI8
Number of Residues122
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01350","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues260
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00445","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues60
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01394","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues798
DetailsTransmembrane: {"description":"Helical","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues60
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01456","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues29
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 1","evidences":[{"source":"HAMAP-Rule","id":"MF_01351","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues29
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 2","evidences":[{"source":"HAMAP-Rule","id":"MF_01351","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01351","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI16
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01356","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI17
Number of Residues23
DetailsTransmembrane: {"description":"Helical; Name=I","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI18
Number of Residues23
DetailsTransmembrane: {"description":"Helical; Name=II","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI19
Number of Residues24
DetailsTransmembrane: {"description":"Helical; Name=III","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI20
Number of Residues18
DetailsTransmembrane: {"description":"Helical; Name=IV","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI21
Number of Residues23
DetailsTransmembrane: {"description":"Helical; Name=V","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI22
Number of Residues26
DetailsTransmembrane: {"description":"Helical; Name=VI","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI23
Number of Residues22
DetailsTransmembrane: {"description":"Helical; Name=VII","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI24
Number of Residues18
DetailsTransmembrane: {"description":"Helical; Name=VIII","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI25
Number of Residues21
DetailsTransmembrane: {"description":"Helical; Name=IX","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI26
Number of Residues22
DetailsTransmembrane: {"description":"Helical; Name=X","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI27
Number of Residues20
DetailsTransmembrane: {"description":"Helical; Name=XI","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI28
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI29
Number of Residues2
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00458","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI30
Number of Residues23
DetailsTransmembrane: {"description":"Helical; Name=I","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI31
Number of Residues23
DetailsTransmembrane: {"description":"Helical; Name=II","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI32
Number of Residues24
DetailsTransmembrane: {"description":"Helical; Name=III","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI33
Number of Residues18
DetailsTransmembrane: {"description":"Helical; Name=IV","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI34
Number of Residues23
DetailsTransmembrane: {"description":"Helical; Name=V","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI35
Number of Residues26
DetailsTransmembrane: {"description":"Helical; Name=VI","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI36
Number of Residues22
DetailsTransmembrane: {"description":"Helical; Name=VII","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI37
Number of Residues18
DetailsTransmembrane: {"description":"Helical; Name=VIII","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI38
Number of Residues21
DetailsTransmembrane: {"description":"Helical; Name=IX","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI39
Number of Residues22
DetailsTransmembrane: {"description":"Helical; Name=X","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI40
Number of Residues20
DetailsTransmembrane: {"description":"Helical; Name=XI","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI41
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI42
Number of Residues2
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00482","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI43
Number of Residues29
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 1","evidences":[{"source":"HAMAP-Rule","id":"MF_01303","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI44
Number of Residues29
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 2","evidences":[{"source":"HAMAP-Rule","id":"MF_01303","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI45
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01303","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI46
Number of Residues8
DetailsRegion: {"description":"Ferredoxin and ferredoxin-oxidoreductase binding","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI48
Number of Residues32
DetailsTopological domain: {"description":"Lumenal","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI49
Number of Residues6
DetailsTopological domain: {"description":"Stromal","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

253091

PDB entries from 2026-05-06

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