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9F5H

Crystal structure of MGAT5 bump-and-hole mutant in complex with UDP and M592

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, BSecreted alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase Apolymer51558856.82UniProt (Q09328)
In PDB
Homo sapiens (human)Secreted beta-1,6-N-acetylglucosaminyltransferase V,Secreted GNT-V
2A, BURIDINE-5'-DIPHOSPHATEnon-polymer404.22Chemie (UDP)
3A, B2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.22Chemie (NAG)
4Aalpha-D-mannopyranosenon-polymer180.22Chemie (MAN)
5BSULFATE IONnon-polymer96.11Chemie (SO4)
6waterwater18.0272Chemie (HOH)
Sequence modifications
A, B: 214 - 328 (UniProt: Q09328)
PDBExternal DatabaseDetails
Ala 297Glu 297engineered mutation
A, B: 333 - 728 (UniProt: Q09328)
PDBExternal DatabaseDetails
Gly 329-linker
Gly 330-linker
Gly 331-linker
Gly 332-linker
Val 445Phe 458engineered mutation
Leu 504Phe 517engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight117713.6
Non-Polymers*Number of molecules7
Total formula weight1707.1
All*Total formula weight119420.7
*Water molecules are not included.

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PDB entries from 2024-10-02

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