9F5H
Crystal structure of MGAT5 bump-and-hole mutant in complex with UDP and M592
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Secreted alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A | polymer | 515 | 58856.8 | 2 | UniProt (Q09328) Pfam (PF15024) | Homo sapiens (human) | Secreted beta-1,6-N-acetylglucosaminyltransferase V,Secreted GNT-V |
| 2 | C, G (A, B) | URIDINE-5'-DIPHOSPHATE | non-polymer | 404.2 | 2 | Chemie (UDP) | |||
| 3 | D, H (A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 4 | E, F (A) | alpha-D-mannopyranose | non-polymer | 180.2 | 2 | Chemie (MAN) | |||
| 5 | I (B) | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 6 | J, K (A, B) | water | water | 18.0 | 272 | Chemie (HOH) |
Sequence modifications
A, B: 214 - 328 (UniProt: Q09328)
A, B: 333 - 728 (UniProt: Q09328)
| PDB | External Database | Details |
|---|---|---|
| Ala 297 | Glu 297 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Gly 329 | - | linker |
| Gly 330 | - | linker |
| Gly 331 | - | linker |
| Gly 332 | - | linker |
| Val 445 | Phe 458 | engineered mutation |
| Leu 504 | Phe 517 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 117713.6 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 1707.1 | |
| All* | Total formula weight | 119420.7 |
