9EN0
KOD-H4 DNA polymerase mutant in a unproductive binary complex with DNA:DNA containing six HNA nucleotides
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | DNA polymerase | polymer | 774 | 89976.5 | 1 | UniProt (D0VWU9) Pfam (PF03104) Pfam (PF00136) | Thermococcus kodakarensis KOD1 | |
| 2 | B (T) | DNA (5'-D(P*AP*CP*(6HT)P*(6HG)P*(6HT)P*(6HG)P*(6HG)P*(6HC)P*CP*GP*TP*GP*GP*TP*C)-3') | polymer | 16 | 5014.4 | 1 | synthetic construct | ||
| 3 | C (P) | DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*CP*AP*CP*A)-3') | polymer | 13 | 3930.6 | 1 | synthetic construct | ||
| 4 | D, E, F, G (A) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 5 | H, I, J, K (A, T) | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
| 6 | L (A) | water | water | 18.0 | 12 | Chemie (HOH) |
Sequence modifications
A: 1 - 774 (UniProt: D0VWU9)
| PDB | External Database | Details |
|---|---|---|
| Gln 93 | Val 93 | conflict |
| Thr 114 | Ile 114 | conflict |
| Ala 141 | Asp 141 | conflict |
| Ala 143 | Glu 143 | conflict |
| His 147 | Glu 147 | conflict |
| Lys 383 | Ser 383 | conflict |
| Gly 429 | Lys 429 | conflict |
| Leu 445 | Phe 445 | conflict |
| Leu 485 | Ala 485 | conflict |
| Val 493 | Tyr 493 | conflict |
| His 496 | Tyr 496 | conflict |
| Met 497 | Tyr 497 | conflict |
| Phe 499 | Tyr 499 | conflict |
| Glu 500 | Ala 500 | conflict |
| Asn 501 | Arg 501 | conflict |
| Leu 521 | Ile 521 | conflict |
| Lys 584 | Glu 584 | conflict |
| Lys 664 | Glu 664 | conflict |
| Arg 726 | Lys 726 | conflict |
| Lys 735 | Asn 735 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 98921.4 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 465.6 | |
| All* | Total formula weight | 99387.0 |
