9EHO

Octopus ribosome, hybrid 80S

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (5)	28S rRNA	polymer	5185	1674451.0	1		Octopus
2	B (7)	5S rRNA	polymer	119	38239.6	1	GenBank (1697376669)	Octopus
3	C (8)	5.8S rRNA	polymer	161	51901.8	1		Octopus
4	D (A)	Large ribosomal subunit protein uL2	polymer	259	28372.1	1	UniProt (A0A0L8HBD8)	Octopus	60S ribosomal protein L8
5	E (B)	60S ribosomal protein L3	polymer	402	46218.2	1	UniProt (A0A0L8GUX3)	Octopus
6	F (I)	Large ribosomal subunit protein uL16	polymer	219	25300.0	1	UniProt (A0A0L8GH20)	Octopus	60S ribosomal protein L10
7	G (P)	Large ribosomal subunit protein uL22	polymer	186	21676.6	1	UniProt (A0A0L8FWK7)	Octopus	60S ribosomal protein L17
8	H (Q)	Large ribosomal subunit protein uL15/eL18 domain-containing protein	polymer	187	21665.8	1	UniProt (A0A0L8GH52)	Octopus
9	I (V)	Large ribosomal subunit protein uL14	polymer	140	14759.5	1	UniProt (A0A6P7SHL5)	Octopus	60S ribosomal protein L23
10	J (a)	Large ribosomal subunit protein uL15	polymer	149	16978.2	1	UniProt (A0A0L8GUZ8)	Octopus	60S ribosomal protein L27a
11	K (e)	60S ribosomal protein L32	polymer	133	15925.8	1	UniProt (A0A6P7T6K0)	Octopus
12	L (g)	Large ribosomal subunit protein eL34	polymer	113	13252.0	1	UniProt (A0A6P7SDP0)	Octopus	60S ribosomal protein L34
13	M (j)	Ribosomal protein L37	polymer	101	11615.6	1	UniProt (A0A0L8GUF0)	Octopus
14	N (m)	Ubiquitin-ribosomal protein eL40 fusion protein	polymer	128	14390.0	1	UniProt (A0A0L8IFH5)	Octopus
15	O (o)	Large ribosomal subunit protein eL42	polymer	106	12527.2	1	UniProt (A0A0L8H955)	Octopus
16	P (p)	Large ribosomal subunit protein eL43	polymer	92	10250.3	1	UniProt (A0A0L8FTQ7)	Octopus	60S ribosomal protein L37a
17	Q (C)	Large ribosomal subunit protein uL4 C-terminal domain-containing protein	polymer	488	54810.2	1	UniProt (A0A0L8I1Q2)	Octopus
18	R (D)	Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein	polymer	296	34344.7	1	UniProt (A0A0L8GVI8)	Octopus
19	S (E)	Large ribosomal subunit protein eL6	polymer	277	32395.6	1	UniProt (A0A0L8HB73)	Octopus	60S ribosomal protein L6
20	T (F)	60S ribosomal protein L7 isoform X1	polymer	343	39385.0	1	UniProt (A0A6P7SRC5)	Octopus
21	U (G)	60S ribosomal protein L7a	polymer	265	30369.0	1	UniProt (A0A6P7TFK4)	Octopus
22	V (H)	Large ribosomal subunit protein uL6	polymer	187	21256.7	1	UniProt (A0A0L8GSW6)	Octopus	60S ribosomal protein L9
23	W (J)	60S ribosomal protein L11	polymer	180	20770.1	1	UniProt (A0A6P7S926)	Octopus	Ribosomal L11
24	X (L)	Large ribosomal subunit protein eL13	polymer	211	24775.5	1	UniProt (A0A0L8HYP5)	Octopus	60S ribosomal protein L13
25	Y (M)	Large ribosomal subunit protein eL14	polymer	153	17796.3	1	UniProt (A0A0L8HPP0)	Octopus	60S ribosomal protein L14
26	Z (N)	Ribosomal protein L15	polymer	204	24144.6	1	UniProt (A0A0L8FH14)	Octopus
27	AA (O)	Large ribosomal subunit protein uL13	polymer	203	23563.3	1	UniProt (A0A0L8ICA5)	Octopus	60S ribosomal protein L13a
28	BA (R)	Ribosomal protein L19	polymer	196	23470.1	1	UniProt (A0A6P7SCW8)	Octopus
29	CA (S)	60S ribosomal protein L18a	polymer	176	20936.6	1	UniProt (A0A6P7SAY7)	Octopus
30	DA (T)	60S ribosomal protein L21	polymer	160	18471.0	1	UniProt (A0A0L8HKY0)	Octopus
31	EA (U)	Large ribosomal subunit protein eL22	polymer	136	15865.2	1	UniProt (A0A6P7TBZ9)	Octopus	60S ribosomal protein L22
32	FA (W)	Large ribosomal subunit protein eL24	polymer	158	18118.6	1	UniProt (A0A6P7T9B6)	Octopus	60S ribosomal protein L24
33	GA (X)	Large ribosomal subunit protein uL23 N-terminal domain-containing protein	polymer	201	22882.2	1	UniProt (A0A0L8HCQ3)	Octopus
34	HA (Y)	Large ribosomal subunit protein uL24	polymer	143	16866.9	1	UniProt (A0A0L8HTW6)	Octopus	60S ribosomal protein L26
35	IA (Z)	Large ribosomal subunit protein eL27	polymer	136	16198.3	1	UniProt (A0A0L8HEV7)	Octopus	60S ribosomal protein L27
36	JA (b)	60S ribosomal protein L29	polymer	91	10729.5	1	UniProt (A0A0L8G2J8)	Octopus
37	KA (c)	Large ribosomal subunit protein eL30	polymer	116	12843.0	1	UniProt (A0A6P7SRS2)	Octopus	60S ribosomal protein L30
38	LA (d)	Large ribosomal subunit protein eL31	polymer	121	14433.2	1	UniProt (A0A0L8FL34)	Octopus	60S ribosomal protein L31
39	MA (f)	Large ribosomal subunit protein eL33	polymer	132	14928.7	1	UniProt (A0AA36B3M9)	Octopus	60S ribosomal protein L35a
40	NA (h)	60S ribosomal protein L35	polymer	123	14678.9	1	UniProt (A0A0L8GA56)	Octopus
41	OA (i)	Large ribosomal subunit protein eL36	polymer	114	13262.1	1	UniProt (A0A0L8G079)	Octopus	60S ribosomal protein L36
42	PA (k)	eL38	polymer	103	12091.4	1		Octopus
43	QA (l)	Large ribosomal subunit protein eL39	polymer	51	6319.7	1	UniProt (A0A0L8GH95)	Octopus	60S ribosomal protein L39
44	RA (r)	Large ribosomal subunit protein eL28	polymer	134	15691.9	1	UniProt (A0A0L8IE99)	Octopus	60S ribosomal protein L28
45	SA (n)	eS32	polymer	25	3473.5	1		Octopus
46	TA (AA)	18S rRNA	polymer	2985	962557.9	1		Octopus
47	UA (aa)	40S ribosomal protein S25	polymer	118	13193.5	1	UniProt (A0A6P7SED9)	Octopus
48	VA (bb)	40S ribosomal protein S26	polymer	118	13419.8	1	UniProt (A0A0L8HXQ8)	Octopus
49	WA (BB)	Small ribosomal subunit protein uS2	polymer	300	32683.9	1	UniProt (A0A0L8HYK6)	Octopus
50	XA (ee)	Small ribosomal subunit protein uS14	polymer	56	6682.8	1	UniProt (A0A0L8FZK2)	Octopus	40S ribosomal protein S29
51	YA (CC)	Small ribosomal subunit protein eS1	polymer	264	29796.0	1	UniProt (A0A0L8GKW9)	Octopus
52	ZA (cc)	40S ribosomal protein S27	polymer	84	9498.3	1	UniProt (A0A0L8HUU3)	Octopus
53	AB (DD)	Small ribosomal subunit protein uS5	polymer	277	30003.8	1	UniProt (A0A0L8FIV1)	Octopus	40S ribosomal protein S2
54	BB (dd)	Small ribosomal subunit protein eS28	polymer	67	7593.7	1	UniProt (A0A0L8FIY8)	Octopus	40S ribosomal protein S28
55	CB (EE)	40S ribosomal protein S3	polymer	241	26894.6	1	UniProt (A0A7E6FAP0)	Octopus
56	DB (FF)	40S ribosomal protein S4	polymer	263	30057.5	1	UniProt (A0A6P7TL90)	Octopus
57	EB (ff)	eS30	polymer	176	19687.0	1	UniProt (A0A6P7SBH5)	Octopus
58	FB (GG)	Ribosomal S5	polymer	204	23012.6	1	UniProt (A0AA36AJI8)	Octopus
59	GB (HH)	Small ribosomal subunit protein eS6	polymer	808	85150.3	1	UniProt (A0A0L8FU76)	Octopus	40S ribosomal protein S6
60	HB (hh)	Small ribosomal subunit protein RACK1	polymer	317	35185.6	1	UniProt (A0A0L8FPF8)	Octopus
61	IB (II)	40S ribosomal protein S7	polymer	193	22503.6	1	UniProt (A0AA36BFQ8)	Octopus
62	JB (JJ)	40S ribosomal protein S8	polymer	208	24049.2	1	UniProt (A0A6P7S8V1)	Octopus
63	KB (KK)	Small ribosomal subunit protein uS4	polymer	191	22436.3	1	UniProt (A0AA36EZW4)	Octopus	40S ribosomal protein S9
64	LB (LL)	Plectin/eS10 N-terminal domain-containing protein	polymer	156	17844.5	1	UniProt (A0A0L8GNG4)	Octopus
65	MB (MM)	40S ribosomal protein S11	polymer	157	18270.7	1	UniProt (A0AA36BFS1)	Octopus
66	NB (OO)	Small ribosomal subunit protein uS15	polymer	151	17326.6	1	UniProt (A0A0L8G2L9)	Octopus	40S ribosomal protein S13
67	OB (PP)	40S ribosomal protein S14a	polymer	151	16221.6	1	UniProt (A0AA36AUI4)	Octopus
68	PB (QQ)	Small ribosomal subunit protein uS19	polymer	152	17647.0	1	UniProt (A0A0L8GTJ3)	Octopus	40S ribosomal protein S15
69	QB (RR)	40S ribosomal protein S16	polymer	148	16754.7	1	UniProt (A0A6P7SLL6)	Octopus
70	RB (SS)	Small ribosomal subunit protein eS17	polymer	136	15465.0	1	UniProt (A0A6P7T0R9)	Octopus	40S ribosomal protein S17
71	SB (TT)	Small ribosomal subunit protein uS13	polymer	152	17780.9	1	UniProt (A0A6P7SHR0)	Octopus	40S ribosomal protein S18
72	TB (UU)	40S ribosomal protein S19	polymer	157	17619.3	1	UniProt (A0A0L8H8L5)	Octopus
73	UB (VV)	Small ribosomal subunit protein uS10	polymer	120	13477.9	1	UniProt (A0A0L8IH34)	Octopus	40S ribosomal protein S20
74	VB (WW)	40S ribosomal protein S21	polymer	83	9084.3	1	UniProt (A0A6P7SVZ2)	Octopus
75	WB (XX)	40S ribosomal protein S15a	polymer	130	14815.3	1	UniProt (A0A6P7SI58)	Octopus	Ribosomal S15Aa
76	XB (YY)	Small ribosomal subunit protein uS12	polymer	143	15977.8	1	UniProt (A0A6P7SY84)	Octopus	40S ribosomal protein S23
77	YB (ZZ)	40S ribosomal protein S24	polymer	133	15354.3	1	UniProt (A0A6P7SEH2)	Octopus
78	ZB (2)	tRNA	polymer	76	24439.5	1		Octopus
79	AC (3)	tRNA	polymer	76	23630.9	1		Octopus
80	BC (1)	RNA (5'-R(P*AP*CP*CP*AP*AP*AP*AP*AP*CP*C)-3')	polymer	10	3151.0	1		Octopus
81	AD, AE, AF, AG, AH... (5, AA, 2, 7, 8...)	MAGNESIUM ION	non-polymer		24.3	205	Chemie (MG) PubChem (888)
82	FH (5)	SPERMIDINE	non-polymer		145.2	1	Chemie (SPD) PubChem (1102)
83	EK, FK, VH, WH, XH... (bb, ee, g, j, m...)	ZINC ION	non-polymer		65.4	7	Chemie (ZN) PubChem (32051)

Sequence modifications

o: 2 - 106 (UniProt: A0A0L8H955)

PDB	External Database	Details
Met 1	-	initiating methionine

Contents of the asymmetric unit

Polymers	Number of chains	80
	Total formula weight	4281663.2
Non-Polymers*	Number of molecules	213
	Total formula weight	5585.6
All*	Total formula weight	4287248.8

*Water molecules are not included.