9E6Q
Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 23S rRNA | polymer | 3024 | 984007.9 | 1 | Pyrobaculum calidifontis JCM 11548 | ||
| 2 | B (2) | 5S rRNA | polymer | 129 | 41804.0 | 1 | GenBank (126248349) | Pyrobaculum calidifontis JCM 11548 | |
| 3 | C (3) | Putative signal-transduction protein with CBS domains | polymer | 655 | 72127.7 | 1 | UniProt (A3MX58) Pfam (PF00571) | Pyrobaculum calidifontis JCM 11548 | |
| 4 | D (AA) | Large ribosomal subunit protein uL2 | polymer | 244 | 26240.3 | 1 | UniProt (A3MS41) Pfam (PF00181) Pfam (PF03947) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L2 |
| 5 | E (AB) | Large ribosomal subunit protein uL3 | polymer | 338 | 37240.5 | 1 | UniProt (A3MWI4) Pfam (PF00297) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L3 |
| 6 | F (AC) | Large ribosomal subunit protein uL4 | polymer | 285 | 31602.1 | 1 | UniProt (A3MWI5) Pfam (PF00573) | Pyrobaculum calidifontis JCM 11548 | |
| 7 | G (AD) | Large ribosomal subunit protein uL5 | polymer | 178 | 20156.9 | 1 | UniProt (A3MXP8) Pfam (PF00281) Pfam (PF00673) | Pyrobaculum calidifontis JCM 11548 | |
| 8 | H (AE) | Large ribosomal subunit protein uL6 | polymer | 196 | 21663.5 | 1 | UniProt (A3MWV5) Pfam (PF00347) | Pyrobaculum calidifontis JCM 11548 | |
| 9 | I (AF) | Large ribosomal subunit protein eL8 | polymer | 149 | 16013.7 | 1 | UniProt (A3MTA9) Pfam (PF01248) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L7Ae,Ribosomal protein L8e |
| 10 | J (AG) | Large ribosomal subunit protein uL13 | polymer | 186 | 21737.0 | 1 | UniProt (A3MXZ7) Pfam (PF00572) | Pyrobaculum calidifontis JCM 11548 | |
| 11 | K (AH) | Large ribosomal subunit protein eL13 | polymer | 157 | 17939.1 | 1 | UniProt (A3MTP8) Pfam (PF01294) | Pyrobaculum calidifontis JCM 11548 | |
| 12 | L (AI) | Large ribosomal subunit protein uL14 | polymer | 144 | 15768.4 | 1 | UniProt (A3MX34) Pfam (PF00238) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L14 |
| 13 | M, N (AJ, AK) | eL14 | polymer | 103 | 11470.5 | 2 | UniProt (by SIFTS) (A3MS76) | Pyrobaculum calidifontis JCM 11548 | |
| 14 | O (AL) | Large ribosomal subunit protein uL15 | polymer | 156 | 17525.4 | 1 | UniProt (A3MUZ1) Pfam (PF00828) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L15 |
| 15 | P (AM) | 50S ribosomal protein L15e | polymer | 189 | 22623.8 | 1 | UniProt (A3MWR6) Pfam (PF00827) | Pyrobaculum calidifontis JCM 11548 | |
| 16 | Q (AN) | Large ribosomal subunit protein uL16 | polymer | 178 | 19893.2 | 1 | UniProt (A3MXP3) Pfam (PF00252) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L10e |
| 17 | R (AO) | Large ribosomal subunit protein uL18 | polymer | 205 | 23424.3 | 1 | UniProt (A3MSJ3) Pfam (PF17144) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L18 |
| 18 | S (AP) | Large ribosomal subunit protein eL18 | polymer | 122 | 13224.7 | 1 | UniProt (A3MXZ6) Pfam (PF17135) | Pyrobaculum calidifontis JCM 11548 | |
| 19 | T (AQ) | Large ribosomal subunit protein eL19 | polymer | 147 | 17414.3 | 1 | UniProt (A3MSJ4) Pfam (PF01280) | Pyrobaculum calidifontis JCM 11548 | |
| 20 | U (AR) | Large ribosomal subunit protein eL20 | polymer | 78 | 8929.5 | 1 | UniProt (A3MX77) Pfam (PF01775) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L18Ae,50S ribosomal protein L20e,50S ribosomal protein LX |
| 21 | V (AS) | Large ribosomal subunit protein eL21 | polymer | 99 | 11319.3 | 1 | UniProt (A3MWX9) Pfam (PF01157) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L21e |
| 22 | W (AT) | Large ribosomal subunit protein uL22 | polymer | 184 | 21309.2 | 1 | UniProt (A3MTL6) Pfam (PF00237) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L22 |
| 23 | X (AU) | Large ribosomal subunit protein uL23 | polymer | 81 | 9307.1 | 1 | UniProt (A3MWI6) Pfam (PF00276) | Pyrobaculum calidifontis JCM 11548 | |
| 24 | Y (AV) | Large ribosomal subunit protein uL24 | polymer | 128 | 14588.3 | 1 | UniProt (A3MWZ8) Pfam (PF16906) Pfam (PF00467) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L24 |
| 25 | Z (AW) | Large ribosomal subunit protein eL24 | polymer | 62 | 7102.5 | 1 | UniProt (A3MTA8) Pfam (PF01246) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L24e |
| 26 | AA (AX) | Large ribosomal subunit protein uL29 | polymer | 79 | 9158.9 | 1 | UniProt (A3MTL2) Pfam (PF00831) | Pyrobaculum calidifontis JCM 11548 | |
| 27 | BA (AY) | Large ribosomal subunit protein uL30 | polymer | 179 | 20287.8 | 1 | UniProt (A3MU87) Pfam (PF00327) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L30 |
| 28 | CA (AZ) | Large ribosomal subunit protein eL30 | polymer | 101 | 10886.8 | 1 | UniProt (A3MXZ2) Pfam (PF01248) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L30e |
| 29 | DA (Aa) | Large ribosomal subunit protein eL31 | polymer | 91 | 10668.6 | 1 | UniProt (A3MX75) Pfam (PF01198) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L31e |
| 30 | EA (Ab) | Large ribosomal subunit protein eL32 | polymer | 153 | 18172.6 | 1 | UniProt (A3MSJ5) Pfam (PF01655) | Pyrobaculum calidifontis JCM 11548 | |
| 31 | FA (Ac) | Large ribosomal subunit protein eL34 | polymer | 84 | 9373.1 | 1 | UniProt (A3MV68) Pfam (PF01199) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L34e |
| 32 | GA (Ad) | Large ribosomal subunit protein eL37 | polymer | 52 | 6174.3 | 1 | UniProt (A3MY38) Pfam (PF01907) | Pyrobaculum calidifontis JCM 11548 | |
| 33 | HA (Ae) | LSU ribosomal protein L38E | polymer | 67 | 7954.4 | 1 | UniProt (A3MTT1) Pfam (PF01781) | Pyrobaculum calidifontis JCM 11548 | |
| 34 | IA (Af) | Large ribosomal subunit protein eL39 | polymer | 51 | 6030.3 | 1 | UniProt (A3MUU4) Pfam (PF00832) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L39e |
| 35 | JA (Ag) | Large ribosomal subunit protein eL40 | polymer | 53 | 6356.7 | 1 | UniProt (A3MX99) Pfam (PF01020) | Pyrobaculum calidifontis JCM 11548 | 50S ribosomal protein L40e |
| 36 | KA (Ah) | eL42 | polymer | 91 | 10603.6 | 1 | Pfam (PF00935) UniProt (by SIFTS) (A3MUV1) | Pyrobaculum calidifontis JCM 11548 | |
| 37 | LA (Ai) | Large ribosomal subunit protein eL43 | polymer | 102 | 11387.5 | 1 | UniProt (A3MUM7) Pfam (PF01780) | Pyrobaculum calidifontis JCM 11548 | |
| 38 | MA (Aj) | DJ-1/PfpI domain-containing protein | polymer | 184 | 20956.4 | 1 | UniProt (A3MTM7) Pfam (PF01965) | Pyrobaculum calidifontis JCM 11548 | |
| 39 | NA (Ak) | PaREP1 domain containing protein | polymer | 93 | 10938.8 | 1 | UniProt (A3MWU0) | Pyrobaculum calidifontis JCM 11548 | |
| 40 | AB, AC, BB, BC, CB... (1, AL, AM) | SPERMINE | non-polymer | 202.3 | 46 | Chemie (SPM) | |||
| 41 | AD, AE, AF, AG, AH... (1, AA, AL, AN, AT) | MAGNESIUM ION | non-polymer | 24.3 | 173 | Chemie (MG) | |||
| 42 | AJ, BJ, CJ, DJ, ZI (Ad, Ag, Ah, Ai, AW) | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
| 43 | AK, BK, CK, DK, EJ... (AT, AU, AV, AW, 1...) | water | water | 18.0 | 7994 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 40 |
| Total formula weight | 1674853.9 | |
| Non-Polymers* | Number of molecules | 224 |
| Total formula weight | 13839.4 | |
| All* | Total formula weight | 1688693.3 |
