9E6Q

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
3	0046872	molecular_function	metal ion binding
Aa	0002181	biological_process	cytoplasmic translation
Aa	0003735	molecular_function	structural constituent of ribosome
Aa	0005840	cellular_component	ribosome
Aa	0006412	biological_process	translation
Aa	0022625	cellular_component	cytosolic large ribosomal subunit
Aa	1990904	cellular_component	ribonucleoprotein complex
AA	0002181	biological_process	cytoplasmic translation
AA	0003723	molecular_function	RNA binding
AA	0003735	molecular_function	structural constituent of ribosome
AA	0005840	cellular_component	ribosome
AA	0006412	biological_process	translation
AA	0015934	cellular_component	large ribosomal subunit
AA	0019843	molecular_function	rRNA binding
AA	0022625	cellular_component	cytosolic large ribosomal subunit
AA	1990904	cellular_component	ribonucleoprotein complex
Ab	0003735	molecular_function	structural constituent of ribosome
Ab	0005840	cellular_component	ribosome
Ab	0006412	biological_process	translation
Ab	0022625	cellular_component	cytosolic large ribosomal subunit
Ab	0046872	molecular_function	metal ion binding
Ab	1990904	cellular_component	ribonucleoprotein complex
AB	0003723	molecular_function	RNA binding
AB	0003735	molecular_function	structural constituent of ribosome
AB	0005840	cellular_component	ribosome
AB	0006412	biological_process	translation
AB	0019843	molecular_function	rRNA binding
AB	0022625	cellular_component	cytosolic large ribosomal subunit
AB	1990904	cellular_component	ribonucleoprotein complex
Ac	0003735	molecular_function	structural constituent of ribosome
Ac	0005840	cellular_component	ribosome
Ac	0006412	biological_process	translation
Ac	1990904	cellular_component	ribonucleoprotein complex
AC	0003723	molecular_function	RNA binding
AC	0003735	molecular_function	structural constituent of ribosome
AC	0005840	cellular_component	ribosome
AC	0006412	biological_process	translation
AC	0019843	molecular_function	rRNA binding
AC	1990904	cellular_component	ribonucleoprotein complex
Ad	0003723	molecular_function	RNA binding
Ad	0003735	molecular_function	structural constituent of ribosome
Ad	0005840	cellular_component	ribosome
Ad	0006412	biological_process	translation
Ad	0008270	molecular_function	zinc ion binding
Ad	0019843	molecular_function	rRNA binding
Ad	0046872	molecular_function	metal ion binding
Ad	1990904	cellular_component	ribonucleoprotein complex
AD	0000049	molecular_function	tRNA binding
AD	0003723	molecular_function	RNA binding
AD	0003735	molecular_function	structural constituent of ribosome
AD	0005840	cellular_component	ribosome
AD	0006412	biological_process	translation
AD	0019843	molecular_function	rRNA binding
AD	1990904	cellular_component	ribonucleoprotein complex
Ae	0003735	molecular_function	structural constituent of ribosome
Ae	0005840	cellular_component	ribosome
Ae	0006412	biological_process	translation
Ae	1990904	cellular_component	ribonucleoprotein complex
AE	0002181	biological_process	cytoplasmic translation
AE	0003723	molecular_function	RNA binding
AE	0003735	molecular_function	structural constituent of ribosome
AE	0005840	cellular_component	ribosome
AE	0006412	biological_process	translation
AE	0019843	molecular_function	rRNA binding
AE	0022625	cellular_component	cytosolic large ribosomal subunit
AE	1990904	cellular_component	ribonucleoprotein complex
Af	0003735	molecular_function	structural constituent of ribosome
Af	0005840	cellular_component	ribosome
Af	0006412	biological_process	translation
Af	1990904	cellular_component	ribonucleoprotein complex
AF	0001682	biological_process	tRNA 5'-leader removal
AF	0003723	molecular_function	RNA binding
AF	0003735	molecular_function	structural constituent of ribosome
AF	0004526	molecular_function	ribonuclease P activity
AF	0005737	cellular_component	cytoplasm
AF	0005840	cellular_component	ribosome
AF	0006412	biological_process	translation
AF	0008033	biological_process	tRNA processing
AF	0019843	molecular_function	rRNA binding
AF	0042254	biological_process	ribosome biogenesis
AF	1990904	cellular_component	ribonucleoprotein complex
Ag	0003735	molecular_function	structural constituent of ribosome
Ag	0005840	cellular_component	ribosome
Ag	0006412	biological_process	translation
Ag	1990904	cellular_component	ribonucleoprotein complex
AG	0003729	molecular_function	mRNA binding
AG	0003735	molecular_function	structural constituent of ribosome
AG	0005840	cellular_component	ribosome
AG	0006412	biological_process	translation
AG	0015934	cellular_component	large ribosomal subunit
AG	0017148	biological_process	negative regulation of translation
AG	0022625	cellular_component	cytosolic large ribosomal subunit
AG	1990904	cellular_component	ribonucleoprotein complex
Ah	0003723	molecular_function	RNA binding
Ah	0003735	molecular_function	structural constituent of ribosome
Ah	0005840	cellular_component	ribosome
Ah	0006412	biological_process	translation
Ah	0008270	molecular_function	zinc ion binding
Ah	0019843	molecular_function	rRNA binding
Ah	0046872	molecular_function	metal ion binding
Ah	0070180	molecular_function	large ribosomal subunit rRNA binding
Ah	1990904	cellular_component	ribonucleoprotein complex
AH	0003735	molecular_function	structural constituent of ribosome
AH	0005840	cellular_component	ribosome
AH	0006412	biological_process	translation
AH	0046872	molecular_function	metal ion binding
AH	1990904	cellular_component	ribonucleoprotein complex
Ai	0003723	molecular_function	RNA binding
Ai	0003735	molecular_function	structural constituent of ribosome
Ai	0005840	cellular_component	ribosome
Ai	0006412	biological_process	translation
Ai	0008270	molecular_function	zinc ion binding
Ai	0019843	molecular_function	rRNA binding
Ai	0046872	molecular_function	metal ion binding
Ai	0070180	molecular_function	large ribosomal subunit rRNA binding
Ai	1990904	cellular_component	ribonucleoprotein complex
AI	0003723	molecular_function	RNA binding
AI	0003735	molecular_function	structural constituent of ribosome
AI	0005840	cellular_component	ribosome
AI	0006412	biological_process	translation
AI	0019843	molecular_function	rRNA binding
AI	0022625	cellular_component	cytosolic large ribosomal subunit
AI	0070180	molecular_function	large ribosomal subunit rRNA binding
AI	1990904	cellular_component	ribonucleoprotein complex
Aj	0005737	cellular_component	cytoplasm
AJ	0003723	molecular_function	RNA binding
AJ	0003735	molecular_function	structural constituent of ribosome
AJ	0005840	cellular_component	ribosome
AJ	0006412	biological_process	translation
AJ	0022625	cellular_component	cytosolic large ribosomal subunit
AJ	0042273	biological_process	ribosomal large subunit biogenesis
AJ	1990904	cellular_component	ribonucleoprotein complex
AK	0003723	molecular_function	RNA binding
AK	0003735	molecular_function	structural constituent of ribosome
AK	0005840	cellular_component	ribosome
AK	0006412	biological_process	translation
AK	0022625	cellular_component	cytosolic large ribosomal subunit
AK	0042273	biological_process	ribosomal large subunit biogenesis
AK	1990904	cellular_component	ribonucleoprotein complex
AL	0003723	molecular_function	RNA binding
AL	0003735	molecular_function	structural constituent of ribosome
AL	0005840	cellular_component	ribosome
AL	0006412	biological_process	translation
AL	0015934	cellular_component	large ribosomal subunit
AL	0019843	molecular_function	rRNA binding
AL	0022625	cellular_component	cytosolic large ribosomal subunit
AL	1990904	cellular_component	ribonucleoprotein complex
AM	0002181	biological_process	cytoplasmic translation
AM	0003723	molecular_function	RNA binding
AM	0003735	molecular_function	structural constituent of ribosome
AM	0005840	cellular_component	ribosome
AM	0006412	biological_process	translation
AM	0022625	cellular_component	cytosolic large ribosomal subunit
AM	1990904	cellular_component	ribonucleoprotein complex
AN	0003735	molecular_function	structural constituent of ribosome
AN	0005840	cellular_component	ribosome
AN	0006412	biological_process	translation
AN	1990904	cellular_component	ribonucleoprotein complex
AO	0000027	biological_process	ribosomal large subunit assembly
AO	0003723	molecular_function	RNA binding
AO	0003735	molecular_function	structural constituent of ribosome
AO	0005840	cellular_component	ribosome
AO	0006412	biological_process	translation
AO	0008097	molecular_function	5S rRNA binding
AO	0019843	molecular_function	rRNA binding
AO	0022625	cellular_component	cytosolic large ribosomal subunit
AO	1990904	cellular_component	ribonucleoprotein complex
AP	0003723	molecular_function	RNA binding
AP	0003735	molecular_function	structural constituent of ribosome
AP	0005840	cellular_component	ribosome
AP	0006412	biological_process	translation
AP	0022625	cellular_component	cytosolic large ribosomal subunit
AP	1990904	cellular_component	ribonucleoprotein complex
AQ	0003723	molecular_function	RNA binding
AQ	0003735	molecular_function	structural constituent of ribosome
AQ	0005840	cellular_component	ribosome
AQ	0006412	biological_process	translation
AQ	0019843	molecular_function	rRNA binding
AQ	0022625	cellular_component	cytosolic large ribosomal subunit
AQ	0070180	molecular_function	large ribosomal subunit rRNA binding
AQ	1990904	cellular_component	ribonucleoprotein complex
AR	0003723	molecular_function	RNA binding
AR	0003735	molecular_function	structural constituent of ribosome
AR	0005840	cellular_component	ribosome
AR	0006412	biological_process	translation
AR	0019843	molecular_function	rRNA binding
AR	0070180	molecular_function	large ribosomal subunit rRNA binding
AR	1990904	cellular_component	ribonucleoprotein complex
AS	0003735	molecular_function	structural constituent of ribosome
AS	0005840	cellular_component	ribosome
AS	0006412	biological_process	translation
AS	1990904	cellular_component	ribonucleoprotein complex
AT	0002181	biological_process	cytoplasmic translation
AT	0003723	molecular_function	RNA binding
AT	0003735	molecular_function	structural constituent of ribosome
AT	0005840	cellular_component	ribosome
AT	0006412	biological_process	translation
AT	0015934	cellular_component	large ribosomal subunit
AT	0019843	molecular_function	rRNA binding
AT	0022625	cellular_component	cytosolic large ribosomal subunit
AT	1990904	cellular_component	ribonucleoprotein complex
AU	0003723	molecular_function	RNA binding
AU	0003735	molecular_function	structural constituent of ribosome
AU	0005840	cellular_component	ribosome
AU	0006412	biological_process	translation
AU	0019843	molecular_function	rRNA binding
AU	1990904	cellular_component	ribonucleoprotein complex
AV	0003723	molecular_function	RNA binding
AV	0003735	molecular_function	structural constituent of ribosome
AV	0005840	cellular_component	ribosome
AV	0006412	biological_process	translation
AV	0015934	cellular_component	large ribosomal subunit
AV	0019843	molecular_function	rRNA binding
AV	1990904	cellular_component	ribonucleoprotein complex
AW	0003723	molecular_function	RNA binding
AW	0003735	molecular_function	structural constituent of ribosome
AW	0005840	cellular_component	ribosome
AW	0006412	biological_process	translation
AW	0008270	molecular_function	zinc ion binding
AW	0019843	molecular_function	rRNA binding
AW	0046872	molecular_function	metal ion binding
AW	1990904	cellular_component	ribonucleoprotein complex
AX	0003735	molecular_function	structural constituent of ribosome
AX	0005840	cellular_component	ribosome
AX	0006412	biological_process	translation
AX	0022625	cellular_component	cytosolic large ribosomal subunit
AX	1990904	cellular_component	ribonucleoprotein complex
AY	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AY	0003723	molecular_function	RNA binding
AY	0003735	molecular_function	structural constituent of ribosome
AY	0005840	cellular_component	ribosome
AY	0006412	biological_process	translation
AY	0015934	cellular_component	large ribosomal subunit
AY	0022625	cellular_component	cytosolic large ribosomal subunit
AY	1990904	cellular_component	ribonucleoprotein complex
AZ	0003723	molecular_function	RNA binding
AZ	0003735	molecular_function	structural constituent of ribosome
AZ	0005840	cellular_component	ribosome
AZ	0006412	biological_process	translation
AZ	0022625	cellular_component	cytosolic large ribosomal subunit
AZ	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AIVVrqrrpyrrp.DGtwvaFedNavVI

Chain	Residue	Details
AI	ALA83-ILE109

---

site_id	PS00050
Number of Residues	16
Details	RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVKLAegysamdL

Chain	Residue	Details
AU	LYS59-LEU74

---

site_id	PS00051
Number of Residues	17
Details	RIBOSOMAL_L39E Ribosomal protein L39e signature. KTkrrVtrSparRHWRR

Chain	Residue	Details
Af	LYS30-ARG46

---

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FtpgqlvDviAvTkGKGyqGvvkR

Chain	Residue	Details
AB	PHE195-ARG218

---

site_id	PS00475
Number of Residues	31
Details	RIBOSOMAL_L15 Ribosomal protein L15 signature. KLLGgGeLkkr..VvVaavsVTpkAwkkVveaG

Chain	Residue	Details
AP	LYS69-GLY99
AL	LYS115-GLY145

---

site_id	PS00783
Number of Residues	24
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. VRGMLPkkvesGRdalkrLrVYmS

Chain	Residue	Details
AG	VAL99-SER122

---

site_id	PS00939
Number of Residues	27
Details	RIBOSOMAL_L1E Ribosomal protein L1e signature. NwkeKnlAIrSAIaATAykswvaaRGH

Chain	Residue	Details
AC	ASN135-HIS161

---

site_id	PS00993
Number of Residues	21
Details	RIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. ELGAaaKRphkimaLaVvDpG

Chain	Residue	Details
AZ	GLU70-GLY90

---

site_id	PS01073
Number of Residues	18
Details	RIBOSOMAL_L24E Ribosomal protein L24e signature. FcGadIpPGyGimYvRsD

Chain	Residue	Details
AW	PHE8-ASP25

---

site_id	PS01077
Number of Residues	21
Details	RIBOSOMAL_L37E Ribosomal protein L37e signature. GTpSmGkHnkgktHirCpRCG

Chain	Residue	Details
Ad	GLY3-GLY23

---

site_id	PS01082
Number of Residues	18
Details	RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CeekkVPYvyVpSKekLG

Chain	Residue	Details
AF	CYS85-GLY102

---

site_id	PS01104
Number of Residues	15
Details	RIBOSOMAL_L13E Ribosomal protein L13e signature. KeGRGFSLgELkevG

Chain	Residue	Details
AH	LYS22-GLY36

---

site_id	PS01108
Number of Residues	18
Details	RIBOSOMAL_L24 Ribosomal protein L24 signature. GDtVlIMrGdfKGvt.GkV

Chain	Residue	Details
AV	GLY50-VAL67

---

site_id	PS01144
Number of Residues	15
Details	RIBOSOMAL_L31E Ribosomal protein L31e signature. VKLGqaLNeAlWaRS

Chain	Residue	Details
Aa	VAL51-SER65

---

site_id	PS01145
Number of Residues	14
Details	RIBOSOMAL_L34E Ribosomal protein L34e signature. SrSlRrvkvKTPGG

Chain	Residue	Details
Ac	SER8-GLY21

---

site_id	PS01171
Number of Residues	26
Details	RIBOSOMAL_L21E Ribosomal protein L21e signature. GDkVvididptfis.TapHrrYqGkVG

Chain	Residue	Details
AS	GLY38-GLY63

---

site_id	PS01194
Number of Residues	24
Details	RIBOSOMAL_L15E Ribosomal protein L15e signature. ERARkLGYkPkqGVVVARvRLiRG

Chain	Residue	Details
AM	GLU47-GLY70

---

site_id	PS01257
Number of Residues	22
Details	RIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqeGMRlAFGSPaGraARV

Chain	Residue	Details
AN	ALA109-VAL130

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI2
Number of Residues	106
Details	Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	24
Details	Compositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	30
Details	Zinc finger: {"description":"C4-type","evidences":[{"source":"HAMAP-Rule","id":"MF_00773","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00773","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---