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9E09

Cryo-EM structure a single nucleosome (2) focus of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(M, Q)
Histone H3.2polymer13515303.92UniProt (Q71DI3)
Pfam (PF00125)
Homo sapiens (human)H3-clustered histone 13,H3-clustered histone 14,H3-clustered histone 15,Histone H3/m,Histone H3/o
2B, F
(N, R)
Histone H4polymer10311394.42UniProt (P62805)
Pfam (PF15511)
Homo sapiens (human)
3C, G
(O, S)
Histone H2Apolymer12913978.22Pfam (PF00125)
Pfam (PF16211)
UniProt (by SIFTS) (P0C0S8)
Homo sapiens
4D, H
(P, T)
Histone H2Bpolymer12313655.92Pfam (PF00125)
UniProt (by SIFTS) (P06899)
Homo sapiens
5I
(I)
DNA (156-MER)polymer15648421.81Homo sapiens
6J
(J)
DNA (156-MER)polymer15647892.51Homo sapiens
7K
(X)
DNA (cytosine-5)-methyltransferase 3Bpolymer121347.61UniProt (Q9UBC3)Homo sapiens (human)Dnmt3b,DNA methyltransferase HsaIIIB,DNA MTase HsaIIIB,M.HsaIIIB
8L
(V)
DNA (cytosine-5)-methyltransferase 3Bpolymer111234.51UniProt (Q9UBC3)Homo sapiens (human)Dnmt3b,DNA methyltransferase HsaIIIB,DNA MTase HsaIIIB,M.HsaIIIB
Sequence modifications
M, Q: 1 - 135 (UniProt: Q71DI3)
PDBExternal DatabaseDetails
Ala 102Gly 103conflict
X: 736 - 747 (UniProt: Q9UBC3)
PDBExternal DatabaseDetails
Ala 739Gly 822conflict
V: 736 - 746 (UniProt: Q9UBC3)
PDBExternal DatabaseDetails
Ala 739Gly 822conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight207561.5
All*Total formula weight207561.5
*Water molecules are not included.

254587

PDB entries from 2026-06-03

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