9DQY
Structure of western equine encephalitis virus Imperial 181 VLP in complex with house sparrow PCDH10 EC1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E (A, C, E) | Spike glycoprotein E1 | polymer | 434 | 46718.0 | 3 | UniProt (P13897) Pfam (PF01589) | Western equine encephalitis virus | E1 envelope glycoprotein |
| 2 | B, D, F (B, D, F) | Structural polyprotein | polymer | 401 | 44832.0 | 3 | UniProt (C7EPF4) Pfam (PF00943) UniProt (by SIFTS) (P13897) | Western equine encephalitis virus | p130 |
| 3 | G, H, I (G, H, I) | Cadherin domain-containing protein | polymer | 103 | 11834.2 | 3 | UniProt (A0A8D2M0X8) Pfam (PF08266) UniProt (by SIFTS) (A0A8C0UQJ6) | Passer domesticus (house sparrow) | |
| 4 | J, K, L, M, N... (A, B, C, D, E...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 12 | Chemie (NAG) |
Sequence modifications
A, C, E: 1 - 434 (UniProt: P13897)
| PDB | External Database | Details |
|---|---|---|
| Lys 50 | Arg 847 | conflict |
| Arg 73 | Lys 870 | conflict |
| Phe 183 | Leu 980 | conflict |
| Ser 374 | Thr 1171 | conflict |
| Thr 404 | Lys 1201 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 310152.5 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 2654.5 | |
| All* | Total formula weight | 312807.0 |
