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9DB7

Crystal structure of NDM-1 complexed with compound 22

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Metallo-beta-lactamase type 2polymer23324602.72UniProt (C7C422)
Pfam (PF00753)
Klebsiella pneumoniaeB2 metallo-beta-lactamase,Beta-lactamase type II,Metallo-beta-lactamase NDM-1,Metallo-beta-lactamase type II,New Delhi metallo-beta-lactamase-1,NDM-1
2C, D, H, I
(A, B)
{[7-bromo-1-(cyclopentylmethyl)-3-methyl-2-oxo-1,2-dihydroquinolin-4-yl]methyl}phosphonic acidnon-polymer414.24Chemie (A1A14)
3E, F, J, K
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
4G
(B)
GLYCEROLnon-polymer92.11Chemie (GOL)
5L, M
(A, B)
waterwater18.0267Chemie (HOH)
Sequence modifications
A, B: 42 - 270 (UniProt: C7C422)
PDBExternal DatabaseDetails
Gly 38-expression tag
Ser 39-expression tag
His 40-expression tag
Met 41-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight49205.4
Non-Polymers*Number of molecules9
Total formula weight2010.7
All*Total formula weight51216.0
*Water molecules are not included.

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PDB entries from 2025-10-22

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