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9DAG

Crystal structure of NDM-1 complexed with compound 13

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Metallo-beta-lactamase type 2polymer23324602.71UniProt (C7C422)
Pfam (PF00753)
Klebsiella pneumoniaeB2 metallo-beta-lactamase,Beta-lactamase type II,Metallo-beta-lactamase NDM-1,Metallo-beta-lactamase type II,New Delhi metallo-beta-lactamase-1,NDM-1
2B, E
(A)
{[6-fluoro-1-methyl-2-oxo-7-(pyrrolidin-1-yl)-1,2-dihydroquinolin-4-yl]methyl}phosphonic acidnon-polymer340.32Chemie (A1A3B)
3C, D
(A)
GLYCEROLnon-polymer92.12Chemie (GOL)
4F, G
(A)
ZINC IONnon-polymer65.42Chemie (ZN)
5H
(A)
waterwater18.088Chemie (HOH)
Sequence modifications
A: 42 - 270 (UniProt: C7C422)
PDBExternal DatabaseDetails
Gly 38-expression tag
Ser 39-expression tag
His 40-expression tag
Met 41-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight24602.7
Non-Polymers*Number of molecules6
Total formula weight995.6
All*Total formula weight25598.3
*Water molecules are not included.

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PDB entries from 2025-10-29

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