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9D3R

147-bp 5S rDNA nucleosome - closed

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D
(A, E)
Histone H3.2polymer9711391.32UniProt (Q71DI3)
Pfam (PF00125)
Homo sapiens (human)H3-clustered histone 13,H3-clustered histone 14,H3-clustered histone 15,Histone H3/m,Histone H3/o
2B, E
(B, F)
Histone H4polymer829279.92UniProt (P62805)
Pfam (PF15511)
Homo sapiens (human)
3C, F
(D, H)
Histone H2B type 1-Kpolymer9610764.42UniProt (O60814)
Pfam (PF00125)
Homo sapiens (human)H2B K,HIRA-interacting protein 1
4G
(I)
5S rDNA (noncoding strand)polymer14544822.51GenBank (64471)Xenopus borealis (Kenyan clawed frog)
5H
(J)
5S rDNA (coding strand)polymer14544697.41GenBank (64471)Xenopus borealis (Kenyan clawed frog)
6I, J
(C, G)
Histone H2A type 2-Apolymer10411397.32UniProt (Q6FI13)
Pfam (PF00125)
Pfam (PF16211)
Homo sapiens (human)H2A-clustered histone 18,H2A-clustered histone 19,Histone H2A.2,Histone H2A/o
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight175185.7
All*Total formula weight175185.7
*Water molecules are not included.

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PDB entries from 2025-08-27

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