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9CDN

Respiratory supercomplex I+III2 open state

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, MB
(0, Ab)
Cytochrome b-c1 complex subunit 6, mitochondrialpolymer9110685.82UniProt (A0A8D1JI21)
Pfam (PF02320)
Sus scrofa (pig)
2B, NB
(1, Ac)
Ubiquinol-cytochrome c reductase complex 7.2 kDa proteinpolymer647412.52UniProt (A0A8D1J3N6)
Pfam (PF05365)
Sus scrofa (pig)cytochrome b-c1 complex subunit 9
3C, E, JB, KB
(2, 4, Ae, Af)
Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1polymer29932174.74UniProt (F1RNZ1)
Pfam (PF09165)
Pfam (PF02921)
Pfam (PF00355)
Sus scrofa (pig)
4D, OB
(3, Ad)
Cytochrome b-c1 complex subunit 10polymer566560.72UniProt (F1SDI2)
Pfam (PF08997)
Sus scrofa (pig)
5BB, F
(6, v)
Cytochrome b-c1 complex subunit 2, mitochondrialpolymer45348262.42UniProt (F1RPD2)
Pfam (PF05193)
Pfam (PF00675)
Sus scrofa (pig)
6CB, G
(7, w)
Cytochrome bpolymer37942840.72UniProt (Q1HBG9)
Pfam (PF00033)
Pfam (PF00032)
Sus scrofa (pig)
7DB, H
(8, x)
Cytochrome c1polymer32635488.92UniProt (A0A287AZF9)
Pfam (PF02167)
Sus scrofa (pig)
8EB, I
(9, y)
Cytochrome b-c1 complex subunit 7polymer11113587.52UniProt (A0A286ZPR8)
Pfam (PF02271)
Sus scrofa (pig)
9J
(a)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrialpolymer18921587.01UniProt (F1SGC6)
Pfam (PF09781)
Sus scrofa (pig)
10K
(b)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6polymer12815603.21UniProt (A0A4X1UIV8)
Pfam (PF09782)
Sus scrofa (pig)Complex I-B17,NADH-ubiquinone oxidoreductase B17 subunit
11L
(c)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrialpolymer18621702.51UniProt (F1RWL7)
Pfam (PF05821)
Sus scrofa (pig)Complex I-ASHI,NADH-ubiquinone oxidoreductase ASHI subunit
12M
(d)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10polymer17620944.81UniProt (A0A8D0R7A9)
Pfam (PF10249)
Sus scrofa (pig)
13N
(e)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrialpolymer15417384.71UniProt (A0A8D1EYI7)
Pfam (PF10183)
Sus scrofa (pig)
14O
(f)
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrialpolymer768664.11UniProt (A0A8D1EYQ2)
Pfam (PF15088)
UniProt (by SIFTS) (A1XQS6)
Sus scrofa (pig)
15P
(g)
NADH dehydrogenase [ubiquinone] 1 subunit C2polymer12214327.71UniProt (A0A480JRW3)
Pfam (PF06374)
Sus scrofa (pig)
16Q
(h)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5polymer10612506.61UniProt (A0A4X1VX77)
Pfam (PF10200)
Sus scrofa (pig)
17R
(i)
NADH-ubiquinone oxidoreductase chain 2polymer34739077.51UniProt (O79875)
Pfam (PF00361)
Pfam (PF06444)
Sus scrofa (pig)NADH dehydrogenase subunit 2
18S
(j)
NADH-ubiquinone oxidoreductase chain 3polymer11512998.41UniProt (O79880)
Pfam (PF00507)
Sus scrofa (pig)
19T
(k)
NADH-ubiquinone oxidoreductase chain 4Lpolymer9810827.31UniProt (P56632)
Pfam (PF00420)
Sus scrofa (pig)NADH dehydrogenase subunit 4L
20U
(m)
NADH-ubiquinone oxidoreductase chain 6polymer17519021.31UniProt (O79882)
Pfam (PF00499)
Sus scrofa (pig)
21V
(n)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1polymer587044.31UniProt (A0A4X1SNY5)
Pfam (PF08040)
Sus scrofa (pig)Complex I-MNLL,NADH-ubiquinone oxidoreductase MNLL subunit
22W
(o)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4polymer12915117.41UniProt (A0A4X1T6M0)
Pfam (PF07225)
Sus scrofa (pig)
23X
(p)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9polymer22126347.21UniProt (K7GSE5)
Pfam (PF05347)
Sus scrofa (pig)Complex I-B22,NADH-ubiquinone oxidoreductase B22 subunit
24Y
(q)
NADH-ubiquinone oxidoreductase chain 4polymer45951859.41UniProt (O79881)
Pfam (PF01059)
Pfam (PF00361)
Sus scrofa (pig)NADH dehydrogenase subunit 4
25Z
(r)
NADH-ubiquinone oxidoreductase chain 1polymer31835667.51UniProt (O79874)
Pfam (PF00146)
Sus scrofa (pig)NADH dehydrogenase subunit 1
26AA
(B)
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialpolymer46450637.81UniProt (A0A4X1SZP7)
Pfam (PF01512)
Pfam (PF22461)
Pfam (PF10589)
Sus scrofa (pig)
27BA
(C)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrialpolymer46953282.21UniProt (A0A480XQH6)
Pfam (PF00346)
Sus scrofa (pig)
28CA
(D)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrialpolymer26430241.41UniProt (A0A286ZNN4)
Pfam (PF00329)
Sus scrofa (pig)Complex I-30kD,NADH-ubiquinone oxidoreductase 30 kDa subunit
29DA
(E)
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrialpolymer24927439.51UniProt (A0A4X1VRV3)
Pfam (PF01257)
Sus scrofa (pig)
30EA
(F)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialpolymer12313349.01UniProt (A0A4X1THU2)
Pfam (PF10276)
Sus scrofa (pig)
31FA
(H)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrialpolymer21223893.31UniProt (A0A286ZUN9)
Pfam (PF12838)
Sus scrofa (pig)Complex I-23kD,NADH-ubiquinone oxidoreductase 23 kDa subunit
32GA
(I)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrialpolymer19621795.31UniProt (A0A4X1VTL7)
Pfam (PF01058)
Sus scrofa (pig)Complex I-20kD,NADH-ubiquinone oxidoreductase 20 kDa subunit
33HA
(J)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrialpolymer17519718.51UniProt (G8IFA6)
Pfam (PF04800)
Sus scrofa (pig)Complex I-18 kDa,NADH-ubiquinone oxidoreductase 18 kDa subunit
34IA
(K)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12polymer14517162.41UniProt (F1SQP4)
Pfam (PF05071)
Sus scrofa (pig)
35JA
(L)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrialpolymer37242066.71UniProt (F1SL07)
Pfam (PF01370)
Sus scrofa (pig)Complex I-39kD,NADH-ubiquinone oxidoreductase 39 kDa subunit
36KA
(N)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 isoform X1polymer11613321.61UniProt (A0A8D0UWW0)
Pfam (PF04716)
Sus scrofa (pig)
37LA, UA
(O, X)
Acyl carrier proteinpolymer15617308.22UniProt (A0A8D1WW27)
Pfam (PF00550)
Sus scrofa (pig)
38MA
(P)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2polymer9911099.81UniProt (A0A8D1FN21)
Pfam (PF05047)
Sus scrofa (pig)
39NA
(Q)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6polymer15417890.01UniProt (A0A8D0Z0K9)
Pfam (PF05347)
Sus scrofa (pig)Complex I-B14,NADH-ubiquinone oxidoreductase B14 subunit
40OA
(R)
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrialpolymer11012172.81UniProt (A0A480TFA5)
Pfam (PF15880)
Sus scrofa (pig)Complex I-9kD,NADH-ubiquinone oxidoreductase 9 kDa subunit
41PA
(S)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1polymer708034.41UniProt (A0A8D0TJQ4)
Pfam (PF15879)
Sus scrofa (pig)
42QA
(T)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3polymer16918319.01UniProt (A0A4X1VPG4)
Pfam (PF14987)
Sus scrofa (pig)Complex I-B9,NADH-ubiquinone oxidoreductase B9 subunit
43RA
(U)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrialpolymer35740476.11UniProt (F1SIS9)
Pfam (PF01712)
Sus scrofa (pig)
44SA
(V)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11polymer14114686.91UniProt (I3LGM4)
Pfam (PF02466)
Sus scrofa (pig)
45TA
(W)
NADH:ubiquinone oxidoreductase subunit A13polymer14416911.61UniProt (A0A8D0K655)
Pfam (PF06212)
Sus scrofa (pig)
46VA
(Y)
NADH:ubiquinone oxidoreductase subunit B2polymer10511939.41UniProt (A0A8D1G9F4)
Pfam (PF14813)
Sus scrofa (pig)
47WA
(Z)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3polymer11412857.61UniProt (A0A8D0INK7)
Pfam (PF08122)
Sus scrofa (pig)Complex I-B12,NADH-ubiquinone oxidoreductase B12 subunit
48XA
(l)
NADH-ubiquinone oxidoreductase chain 5polymer60668695.51UniProt (Q9TDR1)
Pfam (PF00662)
Pfam (PF00361)
Pfam (PF06455)
Sus scrofa (pig)NADH dehydrogenase subunit 5
49YA
(s)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8polymer24927760.81UniProt (F1SLR1)
Pfam (PF06747)
Sus scrofa (pig)Complex I-19kD,NADH-ubiquinone oxidoreductase 19 kDa subunit
50ZA
(t)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7polymer13716487.91UniProt (F1SCH1)
Pfam (PF05676)
Sus scrofa (pig)
51AB, GB
(u, 5)
Cytochrome b-c1 complex subunit 1, mitochondrialpolymer48052756.32UniProt (A0A8D0PK14)
Pfam (PF00675)
Pfam (PF05193)
Sus scrofa (pig)
52FB, LB
(z, Aa)
Cytochrome b-c1 complex subunit 8polymer829784.32UniProt (A0A8D0SHY6)
Pfam (PF02939)
Sus scrofa (pig)
53HB
(G)
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrialpolymer72779627.41UniProt (A0A287ARY3)
Pfam (PF13510)
Pfam (PF10588)
Pfam (PF22117)
Pfam (PF22151)
Pfam (PF00384)
Pfam (PF09326)
Sus scrofa (pig)
54IB
(M)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7polymer11312648.61UniProt (A0A8W4F7N8)
Pfam (PF07347)
Sus scrofa (pig)
55HC, PB, QB, WB
(G, 2, 4, E)
FE2/S2 (INORGANIC) CLUSTERnon-polymer175.84Chemie (FES)
56CC, DC, RB, SB
(w, 7)
PROTOPORPHYRIN IX CONTAINING FEnon-polymer616.54Chemie (HEM)
57EC, TB
(x, 8)
HEME Cnon-polymer618.52Chemie (HEC)
58UB
(B)
FLAVIN MONONUCLEOTIDEnon-polymer456.31Chemie (FMN)
59FC, GC, VB, XB, YB...
(G, B, H, I)
IRON/SULFUR CLUSTERnon-polymer351.66Chemie (SF4)
60AC
(L)
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATEnon-polymer745.41Chemie (NDP)
61BC
(Q)
S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioatenon-polymer568.71Chemie (ZMP)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains67
Total formula weight1651269.8
Non-Polymers*Number of molecules19
Total formula weight8286.5
All*Total formula weight1659556.3
*Water molecules are not included.

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PDB entries from 2026-01-14

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