9C6W
Crystal Structure of a single chain trimer composed of HLA-B*39:06 Y84C variant, beta-2microglobulin, and NRVMLPKAA peptide from NLRP2 (2 molecules/asymmetric unit)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | NACHT, LRR and PYD domains-containing protein 2,Beta-2-microglobulin,MHC class I antigen | polymer | 419 | 46912.5 | 2 | UniProt (Q9NX02) UniProt (P61769) UniProt (I3ZN83) Pfam (PF07654) Pfam (PF00129) In PDB | Homo sapiens (human) | Nucleotide-binding site protein 1,PYRIN domain and NACHT domain-containing protein 1,PYRIN-containing APAF1-like protein 2,Major histocompatibility complex |
2 | B, A | SULFATE ION | non-polymer | 96.1 | 15 | Chemie (SO4) | |||
3 | B, A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 17 | Chemie (EDO) | |||
4 | A | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) | |||
5 | B | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
6 | B | 3,6,9,12,15-PENTAOXAHEPTADECANE | non-polymer | 250.3 | 1 | Chemie (P3G) | |||
7 | B | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
8 | water | water | 18.0 | 419 | Chemie (HOH) |
Sequence modifications
A, B: 323 - 331 (UniProt: Q9NX02)
A, B: 1002 - 1980 (UniProt: P61769)
A, B: 2002 - 2275 (UniProt: I3ZN83)
PDB | External Database | Details |
---|---|---|
Gly 332 | - | linker |
Cys 333 | - | linker |
Gly 988 | - | linker |
Ala 989 | - | linker |
Ser 990 | - | linker |
Gly 991 | - | linker |
Gly 992 | - | linker |
Gly 993 | - | linker |
Gly 994 | - | linker |
Ser 995 | - | linker |
Gly 996 | - | linker |
Gly 997 | - | linker |
Gly 998 | - | linker |
Gly 999 | - | linker |
Ser 1000 | - | linker |
Met 1001 | - | linker |
PDB | External Database | Details |
---|---|---|
Gly 1981 | - | linker |
Gly 1982 | - | linker |
Gly 1983 | - | linker |
Gly 1984 | - | linker |
Ser 1985 | - | linker |
Gly 1986 | - | linker |
Gly 1987 | - | linker |
Gly 1988 | - | linker |
Gly 1989 | - | linker |
Ser 1990 | - | linker |
Gly 1991 | - | linker |
Gly 1992 | - | linker |
Gly 1993 | - | linker |
Gly 1994 | - | linker |
Ser 1995 | - | linker |
Gly 1996 | - | linker |
Gly 1997 | - | linker |
Gly 1998 | - | linker |
Gly 1999 | - | linker |
Ser 2000 | - | linker |
Gly 2001 | - | linker |
PDB | External Database | Details |
---|---|---|
Cys 2084 | Tyr 108 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 93825.1 | |
Non-Polymers* | Number of molecules | 38 |
Total formula weight | 3121.7 | |
All* | Total formula weight | 96946.8 |