9BRD
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | H(+)-transporting two-sector ATPase | polymer | 646 | 71368.4 | 3 | UniProt (D4A133) Pfam (PF02874) Pfam (PF16886) Pfam (PF00006) Pfam (PF22919) | Rattus norvegicus (Norway rat) | |
| 2 | D, E, F (D, E, F) | V-type proton ATPase subunit B, brain isoform | polymer | 511 | 56611.6 | 3 | UniProt (P62815) Pfam (PF02874) Pfam (PF00006) Pfam (PF22919) | Rattus norvegicus (Norway rat) | V-ATPase subunit B 2,Endomembrane proton pump 58 kDa subunit,Vacuolar proton pump subunit B 2 |
| 3 | G (G) | V-type proton ATPase subunit C 1 | polymer | 382 | 43958.5 | 1 | UniProt (Q5FVI6) Pfam (PF03223) | Rattus norvegicus (Norway rat) | V-ATPase subunit C 1,Vacuolar proton pump subunit C 1 |
| 4 | H (H) | ATPase H+-transporting V1 subunit D | polymer | 247 | 28359.0 | 1 | UniProt (Q6P503) Pfam (PF01813) | Rattus norvegicus (Norway rat) | ATPase,H+ transporting,V1 subunit D,isoform CRA_c,lysosomal V1 subunit D |
| 5 | I, J, K (I, J, K) | V-type proton ATPase subunit E 1 | polymer | 226 | 26167.5 | 3 | UniProt (Q6PCU2) Pfam (PF01991) | Rattus norvegicus (Norway rat) | V-ATPase subunit E 1,Vacuolar proton pump subunit E 1 |
| 6 | L (L) | V-type proton ATPase subunit F | polymer | 119 | 13389.3 | 1 | UniProt (P50408) Pfam (PF01990) | Rattus norvegicus (Norway rat) | V-ATPase subunit F,V-ATPase 14 kDa subunit,Vacuolar proton pump subunit F |
| 7 | M, N, O (M, N, O) | V-type proton ATPase subunit G | polymer | 118 | 13690.5 | 3 | UniProt (Q8R2H0) Pfam (PF03179) | Rattus norvegicus (Norway rat) | |
| 8 | P (P) | V-type proton ATPase subunit S1 | polymer | 463 | 51160.4 | 1 | UniProt (O54715) Pfam (PF05827) Pfam (PF20520) | Rattus norvegicus (Norway rat) | V-ATPase subunit S1,C7-1 protein,V-ATPase Ac45 subunit,V-ATPase S1 accessory protein,Vacuolar proton pump subunit S1 |
| 9 | Q, R, S (Q, R, S) | Type IV secretion protein Dot | polymer | 573 | 65505.3 | 3 | UniProt (Q5ZWW6) | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 | |
| 10 | T (T) | V-type proton ATPase subunit H | polymer | 463 | 53695.5 | 1 | UniProt (A0A8I5ZQ24) Pfam (PF03224) Pfam (PF11698) UniProt (by SIFTS) (A0A8I5ZWI2) | Rattus norvegicus (Norway rat) | |
| 11 | U (U) | Synaptophysin | polymer | 307 | 33331.5 | 1 | UniProt (P07825) Pfam (PF01284) | Rattus norvegicus (Norway rat) | Major synaptic vesicle protein p38 |
| 12 | V (a) | V-type proton ATPase 116 kDa subunit a 1 | polymer | 832 | 95722.7 | 1 | UniProt (P25286) Pfam (PF01496) | Rattus norvegicus (Norway rat) | V-ATPase 116 kDa subunit a 1,Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit,Vacuolar adenosine triphosphatase subunit Ac116,Vacuolar proton pump subunit 1,Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1 |
| 13 | W (b) | ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a | polymer | 205 | 21618.6 | 1 | UniProt (B0K022) | Rattus norvegicus (Norway rat) | ATPase,H+ transporting,lysosomal V0 subunit B,Atp6v0b protein |
| 14 | X (d) | V-type proton ATPase subunit | polymer | 351 | 40341.9 | 1 | UniProt (Q5M7T6) | Rattus norvegicus (Norway rat) | |
| 15 | Y (e) | V-type proton ATPase subunit e 2 | polymer | 81 | 9203.0 | 1 | UniProt (Q5EB76) Pfam (PF05493) | Rattus norvegicus (Norway rat) | V-ATPase subunit e 2,Vacuolar proton pump subunit e 2 |
| 16 | Z (f) | Rnasek protein | polymer | 86 | 9502.1 | 1 | UniProt (A0A8J8YMT9) UniProt (by SIFTS) (D3ZIM6) | Rattus norvegicus (Norway rat) | |
| 17 | AA, BA, CA, DA, EA... (g, h, i, j, k...) | V-type proton ATPase 16 kDa proteolipid subunit | polymer | 155 | 15815.8 | 9 | UniProt (P63081) Pfam (PF00137) | Rattus norvegicus (Norway rat) | V-ATPase 16 kDa proteolipid subunit,Vacuolar proton pump 16 kDa proteolipid subunit |
| 18 | JA (p) | Renin receptor | polymer | 350 | 39118.6 | 1 | UniProt (Q6AXS4) Pfam (PF25294) Pfam (PF07850) | Rattus norvegicus (Norway rat) | ATPase H(+)-transporting lysosomal accessory protein 2,ATPase H(+)-transporting lysosomal-interacting protein 2,Renin/prorenin receptor |
| 19 | KA, LA, MA, NA, OA... (V, W, X, Y, Z...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 8 | In PDB GlyTouCan (G42666HT) | |||
| 20 | SA (s) | alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1883.7 | 1 | In PDB GlyTouCan (G71069MN) | |||
| 21 | TA (A) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 22 | DB, UA, UB, VA, WA (b, P, l, a) | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 790.1 | 5 | Chemie (PC1) PubChem (65146) PubChem (94190) PubChem (10417837) | |||
| 23 | EB, FB, LC, MC, NC... (b, p, a) | PHOSPHATIDYLETHANOLAMINE | non-polymer | 734.0 | 9 | Chemie (PTY) PubChem (446872) PubChem (3330137) | |||
| 24 | AB (a) | methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate | non-polymer | 534.6 | 1 | Chemie (WJP) PubChem (155804591) | |||
| 25 | BB (a) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 26 | CB (a) | (7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE | non-polymer | 524.7 | 1 | Chemie (LP3) | |||
| 27 | AC, BC, CC, DC, EC... (m, n, b, h, o...) | CHOLESTEROL | non-polymer | 386.7 | 30 | Chemie (CLR) PubChem (16219173) PubChem (16758052) PubChem (304) PubChem (176980071) PubChem (191463) PubChem (368063) PubChem (369319) PubChem (18640088) PubChem (1715243) PubChem (40477506) PubChem (40557614) PubChem (42579431) PubChem (42579432) PubChem (1715244) PubChem (23423981) PubChem (45044259) PubChem (638019) PubChem (49853509) PubChem (50990013) PubChem (44654663) PubChem (52934537) PubChem (56621683) PubChem (1549081) PubChem (1553803) PubChem (46937002) PubChem (57915018) PubChem (57939063) PubChem (58428240) PubChem (58445498) PubChem (58663286) PubChem (59450329) PubChem (59628412) PubChem (59965215) PubChem (71234641) PubChem (59993755) PubChem (60001463) PubChem (66634651) PubChem (59274407) PubChem (5283629) PubChem (5284644) PubChem (68055877) PubChem (68166463) PubChem (68315613) PubChem (5315842) PubChem (70795838) PubChem (70797612) PubChem (70954610) PubChem (70957185) PubChem (71463909) PubChem (68311425) PubChem (68311398) PubChem (143173313) PubChem (177156123) PubChem (6419195) PubChem (5997) PubChem (6994560) PubChem (7055705) PubChem (7055706) PubChem (7059398) PubChem (7059400) PubChem (7059635) PubChem (7103033) PubChem (7182477) PubChem (7182478) PubChem (89951918) PubChem (90224410) PubChem (91298236) PubChem (9909206) PubChem (10045721) PubChem (71168115) PubChem (10134774) PubChem (10293553) PubChem (71173031) PubChem (11003580) PubChem (11025495) PubChem (11058155) PubChem (11463329) PubChem (1551269) PubChem (90070115) PubChem (11868624) PubChem (11868625) PubChem (11869366) PubChem (11869367) PubChem (11869368) PubChem (11869369) PubChem (12120344) PubChem (12156156) PubChem (12303135) PubChem (12303148) PubChem (12303156) PubChem (12303159) PubChem (12303160) PubChem (117965027) PubChem (6432564) PubChem (101624109) PubChem (6710666) PubChem (124146240) PubChem (7059399) PubChem (124897607) PubChem (124896959) PubChem (10861996) PubChem (132837164) PubChem (11834483) PubChem (11888915) PubChem (11888914) PubChem (124225449) PubChem (124429284) PubChem (124909223) PubChem (124909224) PubChem (124909225) PubChem (138967089) PubChem (139566851) PubChem (130459183) PubChem (131992107) PubChem (15939944) PubChem (139568882) PubChem (142983773) PubChem (144054483) PubChem (144209461) PubChem (144331236) PubChem (144808354) PubChem (145053568) PubChem (145157652) PubChem (145215073) PubChem (145230478) PubChem (146320991) PubChem (147857230) PubChem (154993519) PubChem (171828367) PubChem (173516975) PubChem (158603858) PubChem (162906452) PubChem (162906453) PubChem (162906454) PubChem (162906455) PubChem (162906456) PubChem (162906457) PubChem (163255768) PubChem (163389210) PubChem (164665303) PubChem (166553771) PubChem (166712004) PubChem (170116175) PubChem (171764280) PubChem (171817101) PubChem (171817104) PubChem (174285573) |
Sequence modifications
T: 1 - 463 (UniProt: A0A8I5ZQ24)
| PDB | External Database | Details |
|---|---|---|
| Phe 428 | Ile 428 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 36 |
| Total formula weight | 1281773.0 | |
| Branched | Number of molecules | 9 |
| Total formula weight | 5278.9 | |
| Non-Polymers* | Number of molecules | 48 |
| Total formula weight | 23864.4 | |
| All* | Total formula weight | 1310916.2 |
