9BRD
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | H(+)-transporting two-sector ATPase | polymer | 646 | 71368.4 | 3 | UniProt (D4A133) Pfam (PF02874) Pfam (PF16886) Pfam (PF00006) Pfam (PF22919) | Rattus norvegicus (Norway rat) | |
| 2 | D, E, F (D, E, F) | V-type proton ATPase subunit B, brain isoform | polymer | 511 | 56611.6 | 3 | UniProt (P62815) Pfam (PF02874) Pfam (PF00006) Pfam (PF22919) | Rattus norvegicus (Norway rat) | V-ATPase subunit B 2,Endomembrane proton pump 58 kDa subunit,Vacuolar proton pump subunit B 2 |
| 3 | G (G) | V-type proton ATPase subunit C 1 | polymer | 382 | 43958.5 | 1 | UniProt (Q5FVI6) Pfam (PF03223) | Rattus norvegicus (Norway rat) | V-ATPase subunit C 1,Vacuolar proton pump subunit C 1 |
| 4 | H (H) | ATPase H+-transporting V1 subunit D | polymer | 247 | 28359.0 | 1 | UniProt (Q6P503) Pfam (PF01813) | Rattus norvegicus (Norway rat) | ATPase,H+ transporting,V1 subunit D,isoform CRA_c,lysosomal V1 subunit D |
| 5 | I, J, K (I, J, K) | V-type proton ATPase subunit E 1 | polymer | 226 | 26167.5 | 3 | UniProt (Q6PCU2) Pfam (PF01991) | Rattus norvegicus (Norway rat) | V-ATPase subunit E 1,Vacuolar proton pump subunit E 1 |
| 6 | L (L) | V-type proton ATPase subunit F | polymer | 119 | 13389.3 | 1 | UniProt (P50408) Pfam (PF01990) | Rattus norvegicus (Norway rat) | V-ATPase subunit F,V-ATPase 14 kDa subunit,Vacuolar proton pump subunit F |
| 7 | M, N, O (M, N, O) | V-type proton ATPase subunit G | polymer | 118 | 13690.5 | 3 | UniProt (Q8R2H0) Pfam (PF03179) | Rattus norvegicus (Norway rat) | |
| 8 | P (P) | V-type proton ATPase subunit S1 | polymer | 463 | 51160.4 | 1 | UniProt (O54715) Pfam (PF05827) Pfam (PF20520) | Rattus norvegicus (Norway rat) | V-ATPase subunit S1,C7-1 protein,V-ATPase Ac45 subunit,V-ATPase S1 accessory protein,Vacuolar proton pump subunit S1 |
| 9 | Q, R, S (Q, R, S) | Type IV secretion protein Dot | polymer | 573 | 65505.3 | 3 | UniProt (Q5ZWW6) | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 | |
| 10 | T (T) | V-type proton ATPase subunit H | polymer | 463 | 53695.5 | 1 | UniProt (A0A8I5ZQ24) Pfam (PF03224) Pfam (PF11698) UniProt (by SIFTS) (A0A8I5ZWI2) | Rattus norvegicus (Norway rat) | |
| 11 | U (U) | Synaptophysin | polymer | 307 | 33331.5 | 1 | UniProt (P07825) Pfam (PF01284) | Rattus norvegicus (Norway rat) | Major synaptic vesicle protein p38 |
| 12 | V (a) | V-type proton ATPase 116 kDa subunit a 1 | polymer | 832 | 95722.7 | 1 | UniProt (P25286) Pfam (PF01496) | Rattus norvegicus (Norway rat) | V-ATPase 116 kDa subunit a 1,Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit,Vacuolar adenosine triphosphatase subunit Ac116,Vacuolar proton pump subunit 1,Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1 |
| 13 | W (b) | ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a | polymer | 205 | 21618.6 | 1 | UniProt (B0K022) Pfam (PF00137) | Rattus norvegicus (Norway rat) | ATPase,H+ transporting,lysosomal V0 subunit B,Atp6v0b protein |
| 14 | X (d) | V-type proton ATPase subunit | polymer | 351 | 40341.9 | 1 | UniProt (Q5M7T6) Pfam (PF01992) | Rattus norvegicus (Norway rat) | |
| 15 | Y (e) | V-type proton ATPase subunit e 2 | polymer | 81 | 9203.0 | 1 | UniProt (Q5EB76) Pfam (PF05493) | Rattus norvegicus (Norway rat) | V-ATPase subunit e 2,Vacuolar proton pump subunit e 2 |
| 16 | Z (f) | Rnasek protein | polymer | 86 | 9502.1 | 1 | UniProt (A0A8J8YMT9) | Rattus norvegicus (Norway rat) | |
| 17 | AA, BA, CA, DA, EA... (g, h, i, j, k...) | V-type proton ATPase 16 kDa proteolipid subunit | polymer | 155 | 15815.8 | 9 | UniProt (P63081) Pfam (PF00137) | Rattus norvegicus (Norway rat) | V-ATPase 16 kDa proteolipid subunit,Vacuolar proton pump 16 kDa proteolipid subunit |
| 18 | JA (p) | Renin receptor | polymer | 350 | 39118.6 | 1 | UniProt (Q6AXS4) Pfam (PF07850) | Rattus norvegicus (Norway rat) | ATPase H(+)-transporting lysosomal accessory protein 2,ATPase H(+)-transporting lysosomal-interacting protein 2,Renin/prorenin receptor |
| 19 | KA, LA, MA, NA, OA... (V, W, X, Y, Z...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 8 | In PDB GlyTouCan (G42666HT) | |||
| 20 | SA (s) | alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1883.7 | 1 | In PDB GlyTouCan (G71069MN) | |||
| 21 | TA (A) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 22 | DB, UA, UB, VA, WA (b, P, l, a) | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 790.1 | 5 | Chemie (PC1) | |||
| 23 | EB, FB, LC, MC, NC... (b, p, a) | PHOSPHATIDYLETHANOLAMINE | non-polymer | 734.0 | 9 | Chemie (PTY) | |||
| 24 | AB (a) | methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate | non-polymer | 534.6 | 1 | Chemie (WJP) | |||
| 25 | BB (a) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 26 | CB (a) | (7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE | non-polymer | 524.7 | 1 | Chemie (LP3) | |||
| 27 | AC, BC, CC, DC, EC... (m, n, b, h, o...) | CHOLESTEROL | non-polymer | 386.7 | 30 | Chemie (CLR) |
Sequence modifications
T: 1 - 463 (UniProt: A0A8I5ZQ24)
| PDB | External Database | Details |
|---|---|---|
| Phe 428 | Ile 428 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 36 |
| Total formula weight | 1281773.0 | |
| Branched | Number of molecules | 9 |
| Total formula weight | 5278.9 | |
| Non-Polymers* | Number of molecules | 48 |
| Total formula weight | 23864.4 | |
| All* | Total formula weight | 1310916.2 |
