Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9BDN

80S ribosome with angiogenin and tRNAAla

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A18S	18S rRNA	polymer	1869	602777.9	1		Oryctolagus cuniculus
2	A28S	28S rRNA	polymer	3601	1166972.3	1		Oryctolagus cuniculus
3	A58S	5.8S rRNA	polymer	156	50143.6	1		Oryctolagus cuniculus
4	A5S	5S rRNA	polymer	120	38691.9	1	GenBank (X06789.1)	Oryctolagus cuniculus (rabbit)
5	AL02	60S ribosomal protein L8	polymer	248	26998.6	1	UniProt (G1TT27) In PDB	Oryctolagus cuniculus (rabbit)
6	AL03	60S ribosomal protein L3	polymer	394	45119.8	1	UniProt (G1TL06) In PDB	Oryctolagus cuniculus (rabbit)
7	AL04	60S ribosomal protein L4	polymer	362	41101.4	1	UniProt (A0A5F9DCT1) In PDB	Oryctolagus cuniculus (rabbit)
8	AL05	60S ribosomal protein L5	polymer	293	34077.4	1	UniProt (P19949) In PDB	Oryctolagus cuniculus (rabbit)	Large ribosomal subunit protein uL18
9	AL06	60S ribosomal protein L6	polymer	251	28818.3	1	UniProt (G1SKF7) In PDB	Oryctolagus cuniculus (rabbit)
10	AL07	60S ribosomal protein L7	polymer	225	26658.8	1	UniProt (G1SV32) In PDB	Oryctolagus cuniculus (rabbit)
11	AL08	Large ribosomal subunit protein eL8	polymer	240	27351.4	1	UniProt (G1STW0) In PDB	Oryctolagus cuniculus (rabbit)	60S ribosomal protein L7a
12	AL09	60S ribosomal protein L9	polymer	190	21627.2	1	UniProt (G1SWI6) In PDB	Oryctolagus cuniculus (rabbit)
13	AL10	Ribosomal protein L10	polymer	213	24511.9	1	UniProt (B7NZQ2) In PDB	Oryctolagus cuniculus (rabbit)	Ribosomal protein L10 (Predicted)
14	AL11	60S ribosomal protein L11	polymer	170	19399.5	1	UniProt (G1TUB8) In PDB	Oryctolagus cuniculus (rabbit)
15	AL12	uL11	polymer	153	16561.1	1	UniProt (G1SMR7) In PDB	Oryctolagus cuniculus (rabbit)
16	AL13	Large ribosomal subunit protein eL13	polymer	210	24200.5	1	UniProt (G1TKB3) In PDB	Oryctolagus cuniculus (rabbit)	60S ribosomal protein L13
17	AL14	60S ribosomal protein L14	polymer	138	16217.4	1	UniProt (G1SZ12) In PDB	Oryctolagus cuniculus (rabbit)	Large ribosomal subunit protein eL14
18	AL15	60S ribosomal protein L15	polymer	203	24076.1	1	UniProt (G1T0C1) In PDB	Oryctolagus cuniculus (rabbit)
19	AL16	Large ribosomal subunit protein uL13	polymer	199	23144.9	1	UniProt (G1TVS8) In PDB	Oryctolagus cuniculus (rabbit)	60S ribosomal protein L13a
20	AL17	60S ribosomal protein L17	polymer	153	17758.7	1	UniProt (G1SCJ6) In PDB	Oryctolagus cuniculus (rabbit)
21	AL18	Large ribosomal subunit protein eL18	polymer	187	21568.5	1	UniProt (G1TFE0) In PDB	Oryctolagus cuniculus (rabbit)	60S ribosomal protein L18
22	AL19	60S ribosomal protein L19	polymer	180	21613.0	1	UniProt (G1TYL6) In PDB	Oryctolagus cuniculus (rabbit)
23	AL20	60S ribosomal protein L18a	polymer	176	20827.6	1	UniProt (G1TTY7) In PDB	Oryctolagus cuniculus (rabbit)
24	AL21	60S ribosomal protein L21	polymer	159	18478.8	1	UniProt (G1SHQ2) In PDB	Oryctolagus cuniculus (rabbit)
25	AL22	Large ribosomal subunit protein eL22	polymer	99	11495.3	1	UniProt (G1TSG1) In PDB	Oryctolagus cuniculus (rabbit)	60S ribosomal protein L22
26	AL23	60S ribosomal protein L23	polymer	131	13972.4	1	UniProt (G1T6D1) In PDB	Oryctolagus cuniculus (rabbit)
27	AL24	Ribosomal protein L24	polymer	121	14131.5	1	UniProt (G1SE28) In PDB	Oryctolagus cuniculus (rabbit)
28	AL25	Large ribosomal subunit protein uL23	polymer	118	13727.2	1	UniProt (G1SE76) In PDB	Oryctolagus cuniculus (rabbit)	60S ribosomal protein L23a
29	AL26	60S ribosomal protein L26	polymer	134	15891.8	1	UniProt (G1SQH0) In PDB	Oryctolagus cuniculus (rabbit)
30	AL27	60S ribosomal protein L27	polymer	135	15704.6	1	UniProt (G1TXF6) In PDB	Oryctolagus cuniculus (rabbit)
31	AL28	60S ribosomal protein L27a	polymer	147	16489.4	1	UniProt (G1SNY0) In PDB	Oryctolagus cuniculus (rabbit)
32	AL29	Large ribosomal subunit protein eL29	polymer	245	26708.7	1	UniProt (G1SGR6) In PDB	Oryctolagus cuniculus (rabbit)	60S ribosomal protein L29
33	AL30	60S ribosomal protein L30	polymer	98	10914.8	1	UniProt (G1TDL2) In PDB	Oryctolagus cuniculus (rabbit)
34	AL31	60S ribosomal protein L31	polymer	107	12635.7	1	UniProt (G1SHG0) In PDB	Oryctolagus cuniculus (rabbit)
35	AL32	Large ribosomal subunit protein eL32	polymer	128	15022.0	1	UniProt (G1TUN8) In PDB	Oryctolagus cuniculus (rabbit)	60S ribosomal protein L32
36	AL33	60S ribosomal protein L35a	polymer	109	12449.6	1	UniProt (G1SF08) In PDB	Oryctolagus cuniculus (rabbit)
37	AL34	60S ribosomal protein L34	polymer	114	12994.6	1	UniProt (G1TXG5) In PDB	Oryctolagus cuniculus (rabbit)
38	AL35	60S ribosomal protein L35	polymer	122	14435.4	1	UniProt (G1SIT5) In PDB	Oryctolagus cuniculus (rabbit)
39	AL36	60S ribosomal protein L36	polymer	102	11888.4	1	UniProt (G1TTQ5) In PDB	Oryctolagus cuniculus (rabbit)
40	AL37	60S ribosomal protein L37	polymer	86	10090.9	1	UniProt (U3KPD5) In PDB	Oryctolagus cuniculus (rabbit)
41	AL38	Large ribosomal subunit protein eL38	polymer	69	8107.8	1	UniProt (G1U001) In PDB	Oryctolagus cuniculus (rabbit)	60S ribosomal protein L38
42	AL39	60S ribosomal protein L39	polymer	50	6324.6	1	UniProt (G1TTN1) In PDB	Oryctolagus cuniculus (rabbit)
43	AL40	Large ribosomal subunit protein eL40	polymer	52	6199.6	1	UniProt (P0DXC2) In PDB	Oryctolagus cuniculus (rabbit)	60S ribosomal protein L40
44	AL41	eL41	polymer	25	3473.5	1	UniProt (A0A087WNH4) In PDB	Oryctolagus cuniculus (rabbit)	60s ribosomal protein l41
45	AL42	eL42	polymer	104	12198.6	1	UniProt (A0A5F9D391) In PDB	Oryctolagus cuniculus (rabbit)
46	AL43	60S ribosomal protein L37a	polymer	91	10168.2	1	UniProt (G1SY53) In PDB	Oryctolagus cuniculus (rabbit)
47	ALNW	60S ribosomal protein L28	polymer	124	14220.7	1	UniProt (G1U7L1) In PDB	Oryctolagus cuniculus (rabbit)
48	ALP0	60S acidic ribosomal protein P0	polymer	196	21521.1	1	UniProt (G1SPK4) In PDB	Oryctolagus cuniculus (rabbit)
49	ANG	Angiogenin	polymer	147	16576.1	1	UniProt (P03950) In PDB	Homo sapiens (human)	Ribonuclease 5,RNase 5
50	ARAC	Receptor of activated protein C kinase 1	polymer	313	34669.1	1	UniProt (G1SJB4) In PDB	Oryctolagus cuniculus (rabbit)
51	AS00	40S_SA_C domain-containing protein	polymer	217	24361.9	1	UniProt (G1TJH8) In PDB	Oryctolagus cuniculus (rabbit)
52	AS01	40S ribosomal protein S3a	polymer	213	24759.1	1	UniProt (G1SS70) In PDB	Oryctolagus cuniculus (rabbit)
53	AS02	40S ribosomal protein S2	polymer	221	24441.8	1	UniProt (O18789) In PDB	Oryctolagus cuniculus (rabbit)
54	AS03	40S ribosomal protein S3	polymer	228	25215.6	1	UniProt (G1TNM3) In PDB	Oryctolagus cuniculus (rabbit)
55	AS04	40S ribosomal protein S4	polymer	262	29523.7	1	UniProt (G1TA47) In PDB	Oryctolagus cuniculus (rabbit)
56	AS05	Ribosomal protein S5	polymer	191	21525.9	1	UniProt (G1TFM5) In PDB	Oryctolagus cuniculus (rabbit)
57	AS06	40S ribosomal protein S6	polymer	237	27471.5	1	UniProt (G1TM55) In PDB	Oryctolagus cuniculus (rabbit)
58	AS07	Small ribosomal subunit protein eS7	polymer	189	21629.3	1	UniProt (G1SVB0) In PDB	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S7
59	AS08	40S ribosomal protein S8	polymer	206	24003.0	1	UniProt (G1TJW1) In PDB	Oryctolagus cuniculus (rabbit)
60	AS09	40S ribosomal protein S9	polymer	185	21649.6	1	UniProt (B7NZS8) In PDB	Oryctolagus cuniculus (rabbit)
61	AS10	40S ribosomal protein S10	polymer	96	11529.7	1	UniProt (G1TPV3) In PDB	Oryctolagus cuniculus (rabbit)
62	AS11	40S ribosomal protein S11	polymer	151	17586.8	1	UniProt (G1TRM4) In PDB	Oryctolagus cuniculus (rabbit)
63	AS12	40S ribosomal protein S12	polymer	117	13048.2	1	UniProt (G1SFR8) In PDB	Oryctolagus cuniculus (rabbit)
64	AS13	40S ribosomal protein S13	polymer	149	17057.1	1	UniProt (G1SP51) In PDB	Oryctolagus cuniculus (rabbit)
65	AS14	Small ribosomal subunit protein uS11	polymer	135	14431.5	1	UniProt (G1T1F0) In PDB	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S14
66	AS15	40S ribosomal protein S15	polymer	120	14246.9	1	UniProt (G1U0Q2) In PDB	Oryctolagus cuniculus (rabbit)
67	AS16	Small ribosomal subunit protein uS9	polymer	142	16032.8	1	UniProt (G1SGX4) In PDB	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S16
68	AS17	40S ribosomal protein S17	polymer	132	15250.7	1	UniProt (G1TU13) In PDB	Oryctolagus cuniculus (rabbit)
69	AS18	40S ribosomal protein S18	polymer	144	16898.6	1	UniProt (G1TPG3) In PDB	Oryctolagus cuniculus (rabbit)
70	AS19	Small ribosomal subunit protein eS19	polymer	141	15611.0	1	UniProt (G1TN62) In PDB	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S19
71	AS20	40S ribosomal protein S20	polymer	100	11395.5	1	UniProt (G1SIZ2) In PDB	Oryctolagus cuniculus (rabbit)
72	AS21	eS21	polymer	83	9124.4	1	UniProt (G1TM82) In PDB	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S21
73	AS22	40S ribosomal protein S15a	polymer	129	14734.4	1	UniProt (G1TG89) In PDB	Oryctolagus cuniculus (rabbit)
74	AS23	40S ribosomal protein S23	polymer	141	15626.4	1	UniProt (G1SZ47) In PDB	Oryctolagus cuniculus (rabbit)
75	AS24	40S ribosomal protein S24	polymer	124	14432.1	1	UniProt (G1T3D8) In PDB	Oryctolagus cuniculus (rabbit)
76	AS25	40S ribosomal protein S25	polymer	75	8526.1	1	UniProt (G1TDB3) In PDB	Oryctolagus cuniculus (rabbit)
77	AS26	eS26	polymer	101	11645.8	1	UniProt (G1TFE8) In PDB	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S26
78	AS27	40S ribosomal protein S27	polymer	83	9349.0	1	UniProt (G1TZ76) In PDB	Oryctolagus cuniculus (rabbit)
79	AS28	40S ribosomal protein S28	polymer	62	7007.1	1	UniProt (G1TIB4) In PDB	Oryctolagus cuniculus (rabbit)
80	AS29	40S ribosomal protein S29	polymer	55	6559.6	1	UniProt (G1U7M4) In PDB	Oryctolagus cuniculus (rabbit)
81	AS30	40S ribosomal protein S30	polymer	55	6317.5	1	UniProt (G1T8A2) In PDB	Oryctolagus cuniculus (rabbit)
82	ETRN, PTRN	tRNAfMet	polymer	77	24802.8	2	GenBank (1848934315)	Escherichia coli
83	MRNA	mRNA	polymer	28	8591.2	1		Homo sapiens
84	TIRN	tRNAAla	polymer	76	24486.5	1	GenBank (1163001469)	Saccharomyces cerevisiae

Sequence modifications

A5S: 1 - 120 (GenBank: X06789.1)

PDB	External Database	Details
U 2	N 2	conflict
C 36	N 36	conflict
U 102	N 102	conflict
U 112	N 112	conflict
U 114	N 114	conflict
U 119	C 119	conflict
U 120	N 120	conflict

AL08: 80 - 319 (UniProt: G1STW0)

PDB	External Database	Details
Gly 244	Cys 244	conflict

AL13: 2 - 211 (UniProt: G1TKB3)

PDB	External Database	Details
Arg 74	His 74	conflict
Arg 190	His 190	conflict

AL18: 2 - 188 (UniProt: G1TFE0)

PDB	External Database	Details
Asp 4	Asn 4	conflict
Arg 14	Trp 14	conflict
Met 53	Leu 53	conflict
Arg 58	Trp 58	conflict
Arg 75	Gln 75	conflict
Ala 80	Pro 80	conflict
Val 86	Ile 86	conflict
Arg 104	His 104	conflict
Arg 110	Cys 110	conflict
Val 137	Gly 137	conflict
Gly 157	Arg 157	conflict
Arg 181	Trp 181	conflict

AL19: 2 - 181 (UniProt: G1TYL6)

PDB	External Database	Details
Arg 38	His 38	conflict
Arg 151	His 151	conflict

AL20: 1 - 175 (UniProt: G1TTY7)

PDB	External Database	Details
Met 1	Thr 1	conflict
Pro 18	-	insertion
Thr 19	-	insertion
Pro 20	Ser 18	conflict
Cys 22	Ser 20	conflict
Arg 23	Pro 21	conflict
Thr 24	Ala 22	conflict
Ser 49	Leu 47	conflict
Gln 50	Glu 48	conflict
Arg 95	His 93	conflict
Thr 101	Ile 99	conflict
Thr 102	Met 100	conflict
Gly 104	Ser 102	conflict
Ile 126	Val 124	conflict
Ile 132	Met 130	conflict
Ser 135	Ala 133	conflict
Lys 136	Arg 134	conflict
Arg 138	Pro 136	conflict
Lys 149	Arg 147	conflict
Lys 151	Arg 149	conflict
Thr 168	Tyr 166	conflict
Thr 169	Ala 167	conflict
Phe 176	-	insertion

AL22: 17 - 115 (UniProt: G1TSG1)

PDB	External Database	Details
Leu 18	Val 18	conflict
Gly 32	Arg 32	conflict
Ala 36	Glu 36	conflict
Phe 39	Ser 39	conflict
Gly 54	Arg 54	conflict
Val 60	Ala 60	conflict
Ser 62	Thr 62	conflict
Leu 63	Ile 63	conflict
Arg 97	His 97	conflict
Thr 106	Ser 106	conflict

AL32: 2 - 129 (UniProt: G1TUN8)

PDB	External Database	Details
Ala 3	Ser 3	conflict
Val 13	Ile 13	conflict
Arg 16	Trp 16	conflict
Asn 81	Ser 81	conflict
Glu 98	Lys 98	conflict
Arg 108	Cys 108	conflict
Ala 115	Val 115	conflict

AL38: 2 - 70 (UniProt: G1U001)

PDB	External Database	Details
Lys 24	Asn 24	conflict

AS08: 2 - 207 (UniProt: G1TJW1)

PDB	External Database	Details
Arg 47	Gly 47	conflict

AS19: 3 - 143 (UniProt: G1TN62)

PDB	External Database	Details
Gly 119	Trp 119	conflict

AS21: 1 - 83 (UniProt: G1TM82)

PDB	External Database	Details
Asn 3	Ser 3	conflict
Asp 4	Asn 4	conflict
Gln 33	Pro 33	conflict
Phe 50	Ser 50	conflict
Ala 75	Ser 75	conflict
Asp 76	His 76	conflict
Lys 81	Gln 81	conflict

AS26: 2 - 102 (UniProt: G1TFE8)

PDB	External Database	Details
Arg 28	Cys 28	conflict
Ala 56	Val 56	conflict

TIRN: 1 - 73 (GenBank: 1163001469)
TIRN: 74 - 76 (PDB: 9BDN)

Sequence viewer

Contents of the asymmetric unit

Polymers	Number of chains	85
Polymers	Total formula weight	3314383.7
All*	Total formula weight	3314383.7

*Water molecules are not included.

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)