9B8O

Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, Vo

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	H	ATPase H+-transporting V1 subunit D	polymer	247	28359.0	1	UniProt (Q6P503) Pfam (PF01813) In PDB	Rattus norvegicus (Norway rat)	ATPase,H+ transporting,V1 subunit D,isoform CRA_c,lysosomal V1 subunit D
2	P	V-type proton ATPase subunit S1	polymer	463	51160.4	1	UniProt (O54715) Pfam (PF05827) Pfam (PF20520) In PDB	Rattus norvegicus (Norway rat)	V-ATPase subunit S1,C7-1 protein,V-ATPase Ac45 subunit,V-ATPase S1 accessory protein,Vacuolar proton pump subunit S1
3	U	Synaptophysin	polymer	307	33331.5	1	UniProt (P07825) Pfam (PF01284) In PDB	Rattus norvegicus (Norway rat)	Major synaptic vesicle protein p38
4	a	V-type proton ATPase 116 kDa subunit a 1	polymer	826	94950.8	1	UniProt (P25286) Pfam (PF01496) In PDB	Rattus norvegicus (Norway rat)	V-ATPase 116 kDa subunit a 1,Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit,Vacuolar adenosine triphosphatase subunit Ac116,Vacuolar proton pump subunit 1,Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1
5	b	ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a	polymer	205	21618.6	1	UniProt (B0K022) Pfam (PF00137) In PDB	Rattus norvegicus (Norway rat)	ATPase,H+ transporting,lysosomal V0 subunit B,Atp6v0b protein
6	d	V-type proton ATPase subunit	polymer	351	40341.9	1	UniProt (Q5M7T6) Pfam (PF01992) In PDB	Rattus norvegicus (Norway rat)
7	e	V-type proton ATPase subunit e 2	polymer	81	9203.0	1	UniProt (Q5EB76) Pfam (PF05493) In PDB	Rattus norvegicus (Norway rat)	V-ATPase subunit e 2,Vacuolar proton pump subunit e 2
8	f	Rnasek protein	polymer	86	9502.1	1	UniProt (A0A8J8YMT9) In PDB	Rattus norvegicus (Norway rat)
9	g, h, i, j, k...	V-type proton ATPase 16 kDa proteolipid subunit c	polymer	155	15815.8	9	UniProt (P63081) Pfam (PF00137) In PDB	Rattus norvegicus (Norway rat)	V-ATPase 16 kDa proteolipid subunit c,Vacuolar proton pump 16 kDa proteolipid subunit c
10	p	Renin receptor	polymer	350	39118.6	1	UniProt (Q6AXS4) Pfam (PF07850) In PDB	Rattus norvegicus (Norway rat)	ATPase H(+)-transporting lysosomal accessory protein 2,ATPase H(+)-transporting lysosomal-interacting protein 2,Renin/prorenin receptor
11	L	V-type proton ATPase subunit F	polymer	119	13389.3	1	UniProt (P50408) Pfam (PF01990) In PDB	Rattus norvegicus (Norway rat)	V-ATPase subunit F,V-ATPase 14 kDa subunit,Vacuolar proton pump subunit F
12	I, A, B, C, D...	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	8	In PDB GlyTouCan (G42666HT)
13	Z	alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		1883.7	1	In PDB GlyTouCan (G71069MN)
14	P, l, a, b	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE	non-polymer		790.1	5	Chemie (PC1)
15	a	methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate	non-polymer		534.6	1	Chemie (WJP)
16	a	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	1	Chemie (NAG)
17	a	(7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE	non-polymer		524.7	1	Chemie (LP3)
18	a, b, e, p, j	PHOSPHATIDYLETHANOLAMINE	non-polymer		734.0	9	Chemie (PTY)
19	k, l, m, b, n...	CHOLESTEROL	non-polymer		386.7	30	Chemie (CLR)

Contents of the asymmetric unit

Polymers	Number of chains	19
	Total formula weight	483317.7
Branched	Number of molecules	9
	Total formula weight	5278.9
Non-Polymers*	Number of molecules	47
	Total formula weight	23437.2
All*	Total formula weight	512033.8

*Water molecules are not included.