9B8O
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, Vo
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | ATPase H+-transporting V1 subunit D | polymer | 247 | 28359.0 | 1 | UniProt (Q6P503) Pfam (PF01813) | Rattus norvegicus (Norway rat) | ATPase,H+ transporting,V1 subunit D,isoform CRA_c,lysosomal V1 subunit D |
| 2 | B (P) | V-type proton ATPase subunit S1 | polymer | 463 | 51160.4 | 1 | UniProt (O54715) Pfam (PF05827) Pfam (PF20520) | Rattus norvegicus (Norway rat) | V-ATPase subunit S1,C7-1 protein,V-ATPase Ac45 subunit,V-ATPase S1 accessory protein,Vacuolar proton pump subunit S1 |
| 3 | C (U) | Synaptophysin | polymer | 307 | 33331.5 | 1 | UniProt (P07825) Pfam (PF01284) | Rattus norvegicus (Norway rat) | Major synaptic vesicle protein p38 |
| 4 | D (a) | V-type proton ATPase 116 kDa subunit a 1 | polymer | 826 | 94950.8 | 1 | UniProt (P25286) Pfam (PF01496) | Rattus norvegicus (Norway rat) | V-ATPase 116 kDa subunit a 1,Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit,Vacuolar adenosine triphosphatase subunit Ac116,Vacuolar proton pump subunit 1,Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1 |
| 5 | E (b) | ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a | polymer | 205 | 21618.6 | 1 | UniProt (B0K022) Pfam (PF00137) | Rattus norvegicus (Norway rat) | ATPase,H+ transporting,lysosomal V0 subunit B,Atp6v0b protein |
| 6 | F (d) | V-type proton ATPase subunit | polymer | 351 | 40341.9 | 1 | UniProt (Q5M7T6) Pfam (PF01992) | Rattus norvegicus (Norway rat) | |
| 7 | G (e) | V-type proton ATPase subunit e 2 | polymer | 81 | 9203.0 | 1 | UniProt (Q5EB76) Pfam (PF05493) | Rattus norvegicus (Norway rat) | V-ATPase subunit e 2,Vacuolar proton pump subunit e 2 |
| 8 | H (f) | Rnasek protein | polymer | 86 | 9502.1 | 1 | UniProt (A0A8J8YMT9) UniProt (by SIFTS) (D3ZIM6) | Rattus norvegicus (Norway rat) | |
| 9 | I, J, K, L, M... (g, h, i, j, k...) | V-type proton ATPase 16 kDa proteolipid subunit c | polymer | 155 | 15815.8 | 9 | UniProt (P63081) Pfam (PF00137) | Rattus norvegicus (Norway rat) | V-ATPase 16 kDa proteolipid subunit c,Vacuolar proton pump 16 kDa proteolipid subunit c |
| 10 | R (p) | Renin receptor | polymer | 350 | 39118.6 | 1 | UniProt (Q6AXS4) Pfam (PF07850) | Rattus norvegicus (Norway rat) | ATPase H(+)-transporting lysosomal accessory protein 2,ATPase H(+)-transporting lysosomal-interacting protein 2,Renin/prorenin receptor |
| 11 | S (L) | V-type proton ATPase subunit F | polymer | 119 | 13389.3 | 1 | UniProt (P50408) Pfam (PF01990) | Rattus norvegicus (Norway rat) | V-ATPase subunit F,V-ATPase 14 kDa subunit,Vacuolar proton pump subunit F |
| 12 | AA, T, U, V, W... (I, A, B, C, D...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 8 | In PDB GlyTouCan (G42666HT) | |||
| 13 | BA (Z) | alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1883.7 | 1 | In PDB GlyTouCan (G71069MN) | |||
| 14 | CA, EB, GA, JA, KA (P, l, a, b) | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 790.1 | 5 | Chemie (PC1) | |||
| 15 | DA (a) | methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate | non-polymer | 534.6 | 1 | Chemie (WJP) | |||
| 16 | EA (a) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 17 | FA (a) | (7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE | non-polymer | 524.7 | 1 | Chemie (LP3) | |||
| 18 | HA, IA, LA, MA, OA... (a, b, e, p, j) | PHOSPHATIDYLETHANOLAMINE | non-polymer | 734.0 | 9 | Chemie (PTY) | |||
| 19 | AB, BB, CB, DB, FB... (k, l, m, b, n...) | CHOLESTEROL | non-polymer | 386.7 | 30 | Chemie (CLR) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 19 |
| Total formula weight | 483317.7 | |
| Branched | Number of molecules | 9 |
| Total formula weight | 5278.9 | |
| Non-Polymers* | Number of molecules | 47 |
| Total formula weight | 23437.2 | |
| All* | Total formula weight | 512033.8 |
