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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9ATZ

HIV 16055.v8.3 SOSIP Env in Complex with V2 Epitope and Anti-Immune Complex pAbs from Rabbit 2464

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, F, N
(A, F, N)		Rabbit V2 Polyclonal Antibody - Predicted Light Chainpolymer1089209.33Oryctolagus cuniculus
2B, G, K
(B, G, K)		Rabbit Anti-Immune Complex Antibody - Predicted Light Chainpolymer1129549.83Oryctolagus cuniculus
3C, H, L
(C, H, L)		Rabbit V2 Polyclonal Antibody - Predicted Heavy Chainpolymer12510656.13Oryctolagus cuniculus
4D, I, M
(D, I, M)		Surface protein gp120polymer51458156.33UniProt (A1EAI1)
Pfam (PF00516)		Human immunodeficiency virus 1HIV 16055.v8.3 SOSIP gp120
5E, J, R
(E, J, R)		Rabbit Anti-Immune Complex Antibody - Predicted Heavy Chainpolymer1119464.73Oryctolagus cuniculus
6O, P, Q
(O, P, Q)		Transmembrane protein gp41polymer15517430.73UniProt (A0A0B5KUY7)
Pfam (PF00517)
UniProt (by SIFTS) (A0A866DY39)		Human immunodeficiency virus 1HIV 16055.v8.3 SOSIP gp41
7BA, CA, DA, FA, GA...
(b, c, d, f, g...)		2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.414In PDB
GlyTouCan (G42666HT)
8AA, EA, V
(a, e, V)		alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched910.83In PDB
GlyTouCan (G22768VO)
9AB, BB, CB, DB, EB...
(I, M, D)		2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.229Chemie (NAG)
Sequence modifications
D, I, M: 31 - 508 (UniProt: A1EAI1)
PDBExternal DatabaseDetails
Met -4-initiating methionine
Asp -3-expression tag
Ala -2-expression tag
Met -1-expression tag
Lys 0-expression tag
Arg 1-expression tag
Gly 2-expression tag
Leu 3-expression tag
Cys 4-expression tag
Cys 5-expression tag
Val 6-expression tag
Leu 7-expression tag
Leu 8-expression tag
Leu 9-expression tag
Cys 10-expression tag
Gly 11-expression tag
Ala 12-expression tag
Val 13-expression tag
Phe 14-expression tag
Val 15-expression tag
Ser 16-expression tag
Pro 17-expression tag
Ser 18-expression tag
Gln 19-expression tag
Glu 20-expression tag
Ile 21-expression tag
His 22-expression tag
Ala 23-expression tag
Arg 24-expression tag
Phe 25-expression tag
Arg 26-expression tag
Arg 27-expression tag
Gly 28-expression tag
Ala 29-expression tag
Arg 30-expression tag
Asp 47Glu 44conflict
Glu 49Lys 46conflict
Lys 65Val 62conflict
Arg 66His 63conflict
Cys 73Ala 70conflict
Leu 165Ile 159conflict
Val 304Arg 302conflict
Trp 314Thr 312conflict
Tyr 317Ala 315conflict
Gln 360Ser 359conflict
Arg 426Glu 424conflict
Gln 429Arg 427conflict
Arg 497Ala 495conflict
Cys 498Ala 496conflict
Arg 506Glu 504conflict
Arg 507Lys 505conflict
O, P, Q: 507 - 661 (UniProt: A0A0B5KUY7)
PDBExternal DatabaseDetails
Arg 507Lys 505conflict
Ser 516Ile 514conflict
Pro 556Ile 554conflict
Cys 558Ala 556conflict
Asp 565Leu 563conflict
Gly 566Thr 564conflict
His 567Val 565conflict
His 582Arg 580conflict
Cys 602Thr 600conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains18
Total formula weight343400.6
BranchedNumber of molecules17
Total formula weight8674.1
Non-Polymers*Number of molecules29
Total formula weight6415.0
All*Total formula weight358489.7
*Water molecules are not included.

238895

PDB entries from 2025-07-16

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