8ZHK
SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs, head-to-head aggregate (C3 symmetry)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, G, H... | Spike glycoprotein,Fibritin,Expression Tag | polymer | 1278 | 141253.9 | 6 | UniProt (P0DTC2) UniProt (A0A346FJN8) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein,Phage neck whiskers protein |
2 | D, F, K, L, O... | Light chain of H18 Fab | polymer | 243 | 25768.5 | 6 | Homo sapiens (human) | ||
3 | E, J, M, N, P... | Heavy chain of H18 Fab | polymer | 243 | 25868.3 | 6 | Homo sapiens (human) | ||
4 | a, b, c, d, e... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 24 | In PDB GlyTouCan (G42666HT) | |||
5 | A, G, I, B, H... | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 66 | Chemie (NAG) |
Sequence modifications
A, B, C, G, H, I: 11 - 1208 (UniProt: P0DTC2)
A, B, C, G, H, I: 1211 - 1237 (UniProt: A0A346FJN8)
A, B, C, G, H, I: 1238 - 1288 (PDB: 8ZHK)
PDB | External Database | Details |
---|---|---|
Gly 682 | Arg 682 | conflict |
Ser 683 | Arg 683 | conflict |
Ser 685 | Arg 685 | conflict |
Pro 817 | Phe 817 | conflict |
Pro 892 | Ala 892 | conflict |
Pro 899 | Ala 899 | conflict |
Pro 942 | Ala 942 | conflict |
Pro 986 | Lys 986 | variant |
Pro 987 | Val 987 | variant |
Gly 1209 | - | linker |
Ser 1210 | - | linker |
A, B, C, G, H, I: 1238 - 1288 (PDB: 8ZHK)
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 18 |
Total formula weight | 1157344.0 | |
Branched | Number of molecules | 24 |
Total formula weight | 10185.6 | |
Non-Polymers* | Number of molecules | 66 |
Total formula weight | 14599.7 | |
All* | Total formula weight | 1182129.3 |