8ZHG
SARS-CoV-2 spike trimer (6P) in complex with R1-26 Fab, focused refinement of RBD-Fab region
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C) | Spike glycoprotein,Fibritin,Expression Tag | polymer | 1278 | 141253.9 | 1 | UniProt (P0DTC2) UniProt (A0A346FJN8) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein,Phage neck whiskers protein |
| 2 | B (H) | Heavy chain of R1-26 Fab | polymer | 139 | 15225.3 | 1 | Homo sapiens (human) | ||
| 3 | C (L) | Light chain of R1-26 Fab | polymer | 126 | 13444.6 | 1 | Homo sapiens (human) | ||
| 4 | D (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) |
Sequence modifications
C: 11 - 1208 (UniProt: P0DTC2)
C: 1211 - 1237 (UniProt: A0A346FJN8)
C: 1238 - 1288 (PDB: 8ZHG)
| PDB | External Database | Details |
|---|---|---|
| Gly 682 | Arg 682 | conflict |
| Ser 683 | Arg 683 | conflict |
| Ser 685 | Arg 685 | conflict |
| Pro 817 | Phe 817 | conflict |
| Pro 892 | Ala 892 | conflict |
| Pro 899 | Ala 899 | conflict |
| Pro 942 | Ala 942 | conflict |
| Pro 986 | Lys 986 | variant |
| Pro 987 | Val 987 | variant |
| Gly 1209 | - | linker |
| Ser 1210 | - | linker |
C: 1238 - 1288 (PDB: 8ZHG)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 169923.8 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 424.4 | |
| All* | Total formula weight | 170348.2 |
