8ZHF
SARS-CoV-2 spike trimer (6P) in complex with R1-26 Fab, head-to-head aggregate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... | Spike glycoprotein,Fibritin,Expression Tag | polymer | 1278 | 141253.9 | 6 | UniProt (P0DTC2) UniProt (A0A346FJN8) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein,Phage neck whiskers protein |
| 2 | H, F, J, R, M... | Heavy chain of R1-26 Fab | polymer | 243 | 25908.3 | 6 | Homo sapiens (human) | ||
| 3 | L, G, K, U, N... | Light chain of R1-26 Fab | polymer | 240 | 25558.2 | 6 | Homo sapiens (human) | ||
| 4 | a, b, c, d, e... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 30 | In PDB GlyTouCan (G42666HT) | |||
| 5 | A, D, I, B, E... | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 60 | Chemie (NAG) |
Sequence modifications
A, B, C, D, E, I: 11 - 1208 (UniProt: P0DTC2)
A, B, C, D, E, I: 1211 - 1237 (UniProt: A0A346FJN8)
A, B, C, D, E, I: 1238 - 1288 (PDB: 8ZHF)
| PDB | External Database | Details |
|---|---|---|
| Gly 682 | Arg 682 | conflict |
| Ser 683 | Arg 683 | conflict |
| Ser 685 | Arg 685 | conflict |
| Pro 817 | Phe 817 | conflict |
| Pro 892 | Ala 892 | conflict |
| Pro 899 | Ala 899 | conflict |
| Pro 942 | Ala 942 | conflict |
| Pro 986 | Lys 986 | variant |
| Pro 987 | Val 987 | variant |
| Gly 1209 | - | linker |
| Ser 1210 | - | linker |
A, B, C, D, E, I: 1238 - 1288 (PDB: 8ZHF)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 18 |
| Total formula weight | 1156322.5 | |
| Branched | Number of molecules | 30 |
| Total formula weight | 12732.0 | |
| Non-Polymers* | Number of molecules | 60 |
| Total formula weight | 13272.5 | |
| All* | Total formula weight | 1182327.0 |
