8ZDX
Crystal structure of MjHKU4r-CoV-1 RBD bound to hDPP4
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, C) | Dipeptidyl peptidase 4 membrane form | polymer | 729 | 84577.7 | 2 | UniProt (P27487) Pfam (PF00930) Pfam (PF00326) | Homo sapiens (human) | Dipeptidyl peptidase IV membrane form |
| 2 | C, D (D, B) | Spike glycoprotein | polymer | 208 | 23020.2 | 2 | UniProt (A0AAE8ZFM2) | Pangolin coronavirus HKU4 | S glycoprotein,E2,Peplomer protein |
| 3 | E, F (E, F) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G15407YE) | |||
| 4 | G, H, I (G, H, I) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 5 | J, K, L, M, O... (A, C, D, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 6 | Chemie (NAG) | |||
| 6 | N (C) | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 1 | Chemie (EPE) | |||
| 7 | Q, R (A, C) | water | water | 18.0 | 23 | Chemie (HOH) |
Sequence modifications
D, B: 389 - 596 (UniProt: A0AAE8ZFM2)
| PDB | External Database | Details |
|---|---|---|
| Ala 482 | Ser 482 | conflict |
| Glu 544 | Val 544 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 215195.8 | |
| Branched | Number of molecules | 5 |
| Total formula weight | 2446.3 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 1565.6 | |
| All* | Total formula weight | 219207.6 |
