8YZ5

SARS-CoV-2 Delta Spike in complex with Fab of JE-5C

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C (C, A, D)	Spike glycoprotein	polymer	1259	139421.5	3	UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601)	Severe acute respiratory syndrome coronavirus 2	S glycoprotein,E2,Peplomer protein
2	D, F (G, I)	Fab heavy chain of JE-5C	polymer	119	12748.2	2		Homo sapiens
3	E, G (K, J)	Fab light chain of JE-5C	polymer	107	11802.0	2		Homo sapiens

Sequence modifications

C, A, D: 14 - 1208 (UniProt: P0DTC2)

PDB	External Database	Details
Met -5	-	expression tag
Lys -4	-	expression tag
Val -3	-	expression tag
Lys -2	-	expression tag
Leu -1	-	expression tag
Leu 0	-	expression tag
Val 1	-	expression tag
Leu 2	-	expression tag
Leu 3	-	expression tag
Cys 4	-	expression tag
Thr 5	-	expression tag
Phe 6	-	expression tag
Thr 7	-	expression tag
Ala 8	-	expression tag
Thr 9	-	expression tag
Tyr 10	-	expression tag
Ala 11	-	expression tag
Gly 12	-	expression tag
Thr 13	-	expression tag
Arg 19	Thr 19	variant
Asp 142	Gly 142	variant
-	Glu 156	deletion
-	Phe 157	deletion
Gly 158	Arg 158	variant
Arg 452	Leu 452	variant
Lys 478	Thr 478	variant
Gly 614	Asp 614	variant
Arg 681	Pro 681	variant
Gly 682	Arg 682	variant
Ser 683	Arg 683	variant
Gly 685	Arg 685	variant
Asn 950	Asp 950	variant
Pro 986	Lys 986	variant
Pro 987	Val 987	variant
Asp 1209	-	expression tag
Ile 1210	-	expression tag
Arg 1211	-	expression tag
Ser 1212	-	expression tag
Leu 1213	-	expression tag
Val 1214	-	expression tag
Pro 1215	-	expression tag
Arg 1216	-	expression tag
Gly 1217	-	expression tag
Ser 1218	-	expression tag
Pro 1219	-	expression tag
Gly 1220	-	expression tag
Ser 1221	-	expression tag
Gly 1222	-	expression tag
Tyr 1223	-	expression tag
Ile 1224	-	expression tag
Pro 1225	-	expression tag
Glu 1226	-	expression tag
Ala 1227	-	expression tag
Pro 1228	-	expression tag
Arg 1229	-	expression tag
Asp 1230	-	expression tag
Gly 1231	-	expression tag
Gln 1232	-	expression tag
Ala 1233	-	expression tag
Tyr 1234	-	expression tag
Val 1235	-	expression tag
Arg 1236	-	expression tag
Lys 1237	-	expression tag
Asp 1238	-	expression tag
Gly 1239	-	expression tag
Glu 1240	-	expression tag
Trp 1241	-	expression tag
Val 1242	-	expression tag
Leu 1243	-	expression tag
Leu 1244	-	expression tag
Ser 1245	-	expression tag
Thr 1246	-	expression tag
Phe 1247	-	expression tag
Leu 1248	-	expression tag
Gly 1249	-	expression tag
His 1250	-	expression tag
His 1251	-	expression tag
His 1252	-	expression tag
His 1253	-	expression tag
His 1254	-	expression tag
His 1255	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	7
	Total formula weight	467365.0
All*	Total formula weight	467365.0

*Water molecules are not included.