8YWX
the complex structure of the H4B6 Fab with the RBD of Omicron BA.5 S protein
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | E | H4B6 Fab's heavy chain | polymer | 707 | 76158.0 | 1 | Homo sapiens (human) | ||
2 | D | H4B6 Fab's light chain | polymer | 214 | 23574.2 | 1 | Homo sapiens (human) | ||
3 | A | Spike protein S2' | polymer | 1120 | 124213.0 | 1 | UniProt (P0DTC2) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) |
Sequence modifications
A: 27 - 1146 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Asp 156 | Glu 156 | conflict |
Asp 339 | Gly 339 | variant |
Phe 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Ala 376 | Thr 376 | variant |
Asn 405 | Asp 405 | variant |
Ser 408 | Arg 408 | variant |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Arg 452 | Leu 452 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Val 486 | Phe 486 | variant |
Arg 498 | Gln 498 | variant |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Gly 614 | Asp 614 | variant |
Tyr 655 | His 655 | variant |
Ser 658 | Asn 658 | conflict |
Lys 764 | Asn 764 | variant |
Tyr 796 | Asp 796 | variant |
Pro 817 | Phe 817 | conflict |
Pro 892 | Ala 892 | conflict |
Pro 899 | Ala 899 | conflict |
Pro 942 | Ala 942 | conflict |
His 954 | Gln 954 | variant |
Lys 969 | Asn 969 | variant |
Pro 986 | Lys 986 | variant |
Pro 987 | Val 987 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 223945.1 | |
All* | Total formula weight | 223945.1 |