8YWW
The structure of HKU1-B S protein with bsAb1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1210 | 134104.0 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
2 | E, G | H4B6 heavy chain | polymer | 218 | 23023.8 | 2 | Homo sapiens (human) | ||
3 | D, F | H4B6 light chain | polymer | 212 | 23399.9 | 2 | Homo sapiens (human) | ||
4 | H | the scfv of H4D12 | polymer | 245 | 26383.2 | 1 | Homo sapiens (human) |
Sequence modifications
A, B, C: 1 - 1210 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Ile 19 | Thr 19 | variant |
His 78 | Arg 78 | conflict |
Val 79 | Phe 79 | conflict |
Asp 142 | Gly 142 | variant |
Gly 213 | Val 213 | variant |
Asp 339 | Gly 339 | variant |
Phe 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Ala 376 | Thr 376 | variant |
Asn 405 | Asp 405 | variant |
Ser 408 | Arg 408 | variant |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Arg 452 | Leu 452 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Val 486 | Phe 486 | variant |
Arg 498 | Gln 498 | variant |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Gly 614 | Asp 614 | variant |
Tyr 655 | His 655 | variant |
Ser 658 | Asn 658 | conflict |
Lys 679 | Asn 679 | variant |
His 681 | Pro 681 | variant |
Gly 682 | Arg 682 | conflict |
Ser 683 | Arg 683 | conflict |
Ser 685 | Arg 685 | conflict |
Lys 764 | Asn 764 | variant |
Tyr 796 | Asp 796 | variant |
Pro 817 | Phe 817 | conflict |
Pro 892 | Ala 892 | conflict |
Pro 899 | Ala 899 | conflict |
Pro 942 | Ala 942 | conflict |
His 954 | Gln 954 | variant |
Lys 969 | Asn 969 | variant |
Pro 986 | Lys 986 | variant |
Pro 987 | Val 987 | variant |
Gly 1209 | Tyr 1209 | conflict |
Ser 1210 | Ile 1210 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 521542.6 | |
All* | Total formula weight | 521542.6 |