8YS5
Cryo-EM structure of the Helicobacter pylori OorDABC complex in the apo-form
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E (D, F) | 2-oxoglutarate:acceptor oxidoreductase | polymer | 113 | 12467.6 | 2 | UniProt (A0A0B2EGL0) | Helicobacter pylori | 2-oxoglutarate oxidoreductase OorD subunit, 4Fe-4S dicluster domain-containing protein |
| 2 | B, F (A, G) | 2-oxoglutarate synthase subunit alpha | polymer | 375 | 41565.9 | 2 | UniProt (A0A2T6W5S4) | Helicobacter pylori | |
| 3 | C, G (C, H) | 2-oxoglutarate ferredoxin oxidoreductase subunit beta | polymer | 273 | 30481.7 | 2 | UniProt (A0A024BZG2) Pfam (PF02775) | Helicobacter pylori | 2-oxoglutarate oxidoreductase subunit KorB,2-oxoglutarate-acceptor oxidoreductase subunit OorB |
| 4 | D, H (B, I) | 2-oxoglutarate:acceptor oxidoreductase | polymer | 186 | 20253.5 | 2 | UniProt (A0A0B2EEZ8) | Helicobacter pylori | 2-oxoglutarate oxidoreductase OorC subunit |
| 5 | I, J, K, N, O... (D, C, F, H) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 6 | Chemie (SF4) | |||
| 6 | L, Q (C, H) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 7 | M, R (C, H) | THIAMINE DIPHOSPHATE | non-polymer | 425.3 | 2 | Chemie (TPP) |
Sequence modifications
C, H: 1 - 273 (UniProt: A0A024BZG2)
| PDB | External Database | Details |
|---|---|---|
| Arg 250 | Lys 250 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 209537.4 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 3009.1 | |
| All* | Total formula weight | 212546.4 |
