8YRP
SARS-CoV-2 Delta Spike in complex with JM-1A
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1259 | 139421.5 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | n | JM-1A Heavy Chain | polymer | 115 | 12411.9 | 1 | Homo sapiens | ||
3 | o | JM-1A Light Chain | polymer | 105 | 11275.5 | 1 | Homo sapiens |
Sequence modifications
A, B, C: 14 - 1206 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met -5 | - | expression tag |
Lys -4 | - | expression tag |
Val -3 | - | expression tag |
Lys -2 | - | expression tag |
Leu -1 | - | expression tag |
Leu 0 | - | expression tag |
Val 1 | - | expression tag |
Leu 2 | - | expression tag |
Leu 3 | - | expression tag |
Cys 4 | - | expression tag |
Thr 5 | - | expression tag |
Phe 6 | - | expression tag |
Thr 7 | - | expression tag |
Ala 8 | - | expression tag |
Thr 9 | - | expression tag |
Tyr 10 | - | expression tag |
Ala 11 | - | expression tag |
Gly 12 | - | expression tag |
Thr 13 | - | expression tag |
Arg 19 | Thr 19 | variant |
Asp 142 | Gly 142 | variant |
- | Glu 156 | deletion |
- | Phe 157 | deletion |
Gly 156 | Arg 158 | variant |
Arg 450 | Leu 452 | variant |
Lys 476 | Thr 478 | variant |
Gly 612 | Asp 614 | variant |
Arg 679 | Pro 681 | variant |
Gly 680 | Arg 682 | variant |
Ser 681 | Arg 683 | variant |
Gly 683 | Arg 685 | variant |
Asn 948 | Asp 950 | variant |
Pro 984 | Lys 986 | variant |
Pro 985 | Val 987 | variant |
Asp 1207 | - | expression tag |
Ile 1208 | - | expression tag |
Arg 1209 | - | expression tag |
Ser 1210 | - | expression tag |
Leu 1211 | - | expression tag |
Val 1212 | - | expression tag |
Pro 1213 | - | expression tag |
Arg 1214 | - | expression tag |
Gly 1215 | - | expression tag |
Ser 1216 | - | expression tag |
Pro 1217 | - | expression tag |
Gly 1218 | - | expression tag |
Ser 1219 | - | expression tag |
Gly 1220 | - | expression tag |
Tyr 1221 | - | expression tag |
Ile 1222 | - | expression tag |
Pro 1223 | - | expression tag |
Glu 1224 | - | expression tag |
Ala 1225 | - | expression tag |
Pro 1226 | - | expression tag |
Arg 1227 | - | expression tag |
Asp 1228 | - | expression tag |
Gly 1229 | - | expression tag |
Gln 1230 | - | expression tag |
Ala 1231 | - | expression tag |
Tyr 1232 | - | expression tag |
Val 1233 | - | expression tag |
Arg 1234 | - | expression tag |
Lys 1235 | - | expression tag |
Asp 1236 | - | expression tag |
Gly 1237 | - | expression tag |
Glu 1238 | - | expression tag |
Trp 1239 | - | expression tag |
Val 1240 | - | expression tag |
Leu 1241 | - | expression tag |
Leu 1242 | - | expression tag |
Ser 1243 | - | expression tag |
Thr 1244 | - | expression tag |
Phe 1245 | - | expression tag |
Leu 1246 | - | expression tag |
Gly 1247 | - | expression tag |
His 1248 | - | expression tag |
His 1249 | - | expression tag |
His 1250 | - | expression tag |
His 1251 | - | expression tag |
His 1252 | - | expression tag |
His 1253 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 441952.0 | |
All* | Total formula weight | 441952.0 |