8YRP
SARS-CoV-2 Delta Spike in complex with JM-1A
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 3 |
| Details | SITE: Cleavage; by host furin => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32142651, ECO:0000269|PubMed:32362314, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
| Chain | Residue | Details |
| A | VAL685 | |
| B | VAL685 | |
| C | VAL685 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 3 |
| Details | SITE: Cleavage; by host TMPRSS2 or CTSL => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
| Chain | Residue | Details |
| A | PHE815 | |
| B | PHE815 | |
| C | PHE815 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 9 |
| Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
| Chain | Residue | Details |
| A | ASN17 | |
| A | THR1158 | |
| A | SER1173 | |
| B | ASN17 | |
| B | THR1158 | |
| B | SER1173 | |
| C | ASN17 | |
| C | THR1158 | |
| C | SER1173 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 15 |
| Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
| Chain | Residue | Details |
| A | ASN61 | |
| B | THR1074 | |
| C | ASN61 | |
| C | ASN122 | |
| C | THR717 | |
| C | SER801 | |
| C | THR1074 | |
| A | ASN122 | |
| A | THR717 | |
| A | SER801 | |
| A | THR1074 | |
| B | ASN61 | |
| B | ASN122 | |
| B | THR717 | |
| B | SER801 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 9 |
| Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
| Chain | Residue | Details |
| A | ASN74 | |
| A | ASN149 | |
| A | SER1194 | |
| B | ASN74 | |
| B | ASN149 | |
| B | SER1194 | |
| C | ASN74 | |
| C | ASN149 | |
| C | SER1194 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 21 |
| Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
| Chain | Residue | Details |
| A | THR165 | |
| B | THR331 | |
| B | THR343 | |
| B | THR616 | |
| B | SER657 | |
| B | THR1098 | |
| C | THR165 | |
| C | THR282 | |
| C | THR331 | |
| C | THR343 | |
| C | THR616 | |
| A | THR282 | |
| C | SER657 | |
| C | THR1098 | |
| A | THR331 | |
| A | THR343 | |
| A | THR616 | |
| A | SER657 | |
| A | THR1098 | |
| B | THR165 | |
| B | THR282 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 6 |
| Details | CARBOHYD: N-linked (GlcNAc...) (high mannose) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
| Chain | Residue | Details |
| A | THR234 | |
| A | SER709 | |
| B | THR234 | |
| B | SER709 | |
| C | THR234 | |
| C | SER709 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 3 |
| Details | CARBOHYD: O-linked (GalNAc) threonine; by host => ECO:0000269|PubMed:32363391 |
| Chain | Residue | Details |
| A | SER323 | |
| B | SER323 | |
| C | SER323 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 3 |
| Details | CARBOHYD: O-linked (HexNAc...) serine; by host => ECO:0000269|PubMed:32363391 |
| Chain | Residue | Details |
| A | VAL325 | |
| B | VAL325 | |
| C | VAL325 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 3 |
| Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
| Chain | Residue | Details |
| A | SER603 | |
| B | SER603 | |
| C | SER603 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 6 |
| Details | CARBOHYD: O-linked (GlcNAc...) threonine; by host GALNT1 => ECO:0000269|PubMed:34732583 |
| Chain | Residue | Details |
| A | THR676 | |
| A | SER678 | |
| B | THR676 | |
| B | SER678 | |
| C | THR676 | |
| C | SER678 |
| site_id | SWS_FT_FI12 |
| Number of Residues | 3 |
| Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
| Chain | Residue | Details |
| A | THR1134 | |
| B | THR1134 | |
| C | THR1134 |
