8XC1
C. elegans SID1 in complex with dsRNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, B) | Systemic RNA interference defective protein 1 | polymer | 792 | 90081.7 | 2 | UniProt (Q9GZC8) Pfam (PF13965) | Caenorhabditis elegans | Systemic RNAi enabling protein |
| 2 | B, E (C, E) | RNA (50-MER) | polymer | 50 | 16397.8 | 2 | Arabidopsis thaliana | ||
| 3 | C, F (D, F) | RNA (50-MER) | polymer | 50 | 15791.4 | 2 | Arabidopsis thaliana | ||
| 4 | G, H, I, J (G, H, I, J) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 4 | In PDB GlyTouCan (G42666HT) | |||
| 5 | K, R (A, B) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 6 | L, M, N, O, S... (A, B) | CHOLESTEROL | non-polymer | 386.7 | 8 | Chemie (CLR) | |||
| 7 | P, W (A, B) | (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate | non-polymer | 760.1 | 2 | Chemie (POV) | |||
| 8 | Q, X (A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) |
Sequence modifications
A, B: 18 - 776 (UniProt: Q9GZC8)
| PDB | External Database | Details |
|---|---|---|
| Met -15 | - | initiating methionine |
| Ile -14 | - | expression tag |
| Arg -13 | - | expression tag |
| Val -12 | - | expression tag |
| Tyr -11 | - | expression tag |
| Leu -10 | - | expression tag |
| Ile -9 | - | expression tag |
| Ile -8 | - | expression tag |
| Leu -7 | - | expression tag |
| Met -6 | - | expression tag |
| His -5 | - | expression tag |
| Leu -4 | - | expression tag |
| Val -3 | - | expression tag |
| Ile -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Leu 0 | - | expression tag |
| Thr 1 | - | expression tag |
| His 2 | - | expression tag |
| His 3 | - | expression tag |
| His 4 | - | expression tag |
| His 5 | - | expression tag |
| His 6 | - | expression tag |
| His 7 | - | expression tag |
| Val 8 | - | expression tag |
| Glu 9 | - | expression tag |
| Asp 10 | - | expression tag |
| Tyr 11 | - | expression tag |
| Lys 12 | - | expression tag |
| Asp 13 | - | expression tag |
| Asp 14 | - | expression tag |
| Asp 15 | - | expression tag |
| Asp 16 | - | expression tag |
| Lys 17 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 244541.7 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 1697.6 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 5186.6 | |
| All* | Total formula weight | 251426.0 |
