8WQ4
Structural basis of translation inhibition by a valine tRNA-derived fragment
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A16S | RNA (1328-MER) | polymer | 1501 | 486920.5 | 1 | GenBank (2440479486) | Sulfolobus acidocaldarius DSM 639 | |
2 | VTRF | RNA (26-MER) | polymer | 26 | 8411.9 | 1 | Haloferax volcanii | ||
3 | AS2P | 30S ribosomal protein S2 | polymer | 196 | 22474.0 | 1 | UniProt (P39478) Pfam (PF00318) In PDB | Sulfolobus acidocaldarius DSM 639 | |
4 | AS4E | 30S ribosomal protein S4e | polymer | 240 | 27340.0 | 1 | UniProt (O05634) Pfam (PF01479) Pfam (PF00900) In PDB | Sulfolobus acidocaldarius DSM 639 | |
5 | AS4P | 30S ribosomal protein S4 | polymer | 166 | 19440.6 | 1 | UniProt (P39467) Pfam (PF00163) Pfam (PF01479) In PDB | Sulfolobus acidocaldarius DSM 639 | |
6 | AS5P | 30S ribosomal protein S5 | polymer | 204 | 22782.7 | 1 | UniProt (O05641) Pfam (PF03719) Pfam (PF00333) In PDB | Sulfolobus acidocaldarius DSM 639 | |
7 | AS6E | 30S ribosomal protein S6e | polymer | 105 | 11479.4 | 1 | UniProt (Q4JAI1) Pfam (PF01092) In PDB | Sulfolobus acidocaldarius DSM 639 | |
8 | AS8E | 30S ribosomal protein S8e | polymer | 126 | 14113.2 | 1 | UniProt (Q4JAP5) Pfam (PF01201) In PDB | Sulfolobus acidocaldarius DSM 639 | |
9 | S11P | 30S ribosomal protein S11 | polymer | 128 | 13652.6 | 1 | UniProt (P39469) Pfam (PF00411) In PDB | Sulfolobus acidocaldarius DSM 639 | |
10 | S12P | 30S ribosomal protein S12 | polymer | 143 | 15703.6 | 1 | UniProt (P11524) Pfam (PF00164) In PDB | Sulfolobus acidocaldarius DSM 639 | |
11 | S15P | 30S ribosomal protein S15 | polymer | 149 | 17438.4 | 1 | UniProt (Q4JAI3) Pfam (PF08069) Pfam (PF00312) In PDB | Sulfolobus acidocaldarius DSM 639 | |
12 | S17P | 30S ribosomal protein S17 | polymer | 111 | 12602.6 | 1 | UniProt (Q4JB49) Pfam (PF00366) In PDB | Sulfolobus acidocaldarius DSM 639 | |
13 | S24E | 30S ribosomal protein S24e | polymer | 96 | 10765.2 | 1 | UniProt (Q4JAF9) Pfam (PF01282) In PDB | Sulfolobus acidocaldarius DSM 639 | |
14 | S27E | 30S ribosomal protein S27e | polymer | 59 | 6577.0 | 1 | UniProt (Q4J9B1) Pfam (PF01667) In PDB | Sulfolobus acidocaldarius DSM 639 | |
15 | S3AE | 30S ribosomal protein S3Ae | polymer | 189 | 21876.6 | 1 | UniProt (Q4JB17) Pfam (PF01015) In PDB | Sulfolobus acidocaldarius DSM 639 | Ribosomal protein S1e |
16 | AS3P | 30S ribosomal protein S3 | polymer | 201 | 22396.5 | 1 | UniProt (Q4JB46) Pfam (PF07650) Pfam (PF00189) In PDB | Sulfolobus acidocaldarius DSM 639 | |
17 | AS7P | 30S ribosomal protein S7 | polymer | 193 | 21862.3 | 1 | UniProt (P17198) Pfam (PF00177) In PDB | Sulfolobus acidocaldarius DSM 639 | |
18 | AS9P | 30S ribosomal protein S9 | polymer | 136 | 15638.1 | 1 | UniProt (P39468) Pfam (PF00380) In PDB | Sulfolobus acidocaldarius DSM 639 | |
19 | S10P | 30S ribosomal protein S10 | polymer | 100 | 11775.9 | 1 | UniProt (P17199) Pfam (PF00338) In PDB | Sulfolobus acidocaldarius DSM 639 | |
20 | S13P | 30S ribosomal protein S13 | polymer | 147 | 17140.8 | 1 | UniProt (P39470) Pfam (PF00416) In PDB | Sulfolobus acidocaldarius DSM 639 | |
21 | S14P | 30S ribosomal protein S14 type Z | polymer | 52 | 6190.4 | 1 | UniProt (O05635) Pfam (PF00253) In PDB | Sulfolobus acidocaldarius DSM 639 | |
22 | S17E | 30S ribosomal protein S17e | polymer | 62 | 7336.4 | 1 | UniProt (Q4JAX5) Pfam (PF00833) In PDB | Sulfolobus acidocaldarius DSM 639 | |
23 | S19E | 30S ribosomal protein S19e | polymer | 150 | 17559.7 | 1 | UniProt (Q4J8U1) Pfam (PF01090) In PDB | Sulfolobus acidocaldarius DSM 639 | |
24 | S19P | 30S ribosomal protein S19 | polymer | 115 | 13800.4 | 1 | UniProt (Q4JB44) Pfam (PF00203) In PDB | Sulfolobus acidocaldarius DSM 639 | |
25 | S27A | 30S ribosomal protein S27ae | polymer | 54 | 6261.4 | 1 | UniProt (Q4JAG0) Pfam (PF01599) In PDB | Sulfolobus acidocaldarius DSM 639 | |
26 | S28E | 30S ribosomal protein S28e | polymer | 63 | 7094.3 | 1 | UniProt (Q4JAV1) Pfam (PF01200) In PDB | Sulfolobus acidocaldarius DSM 639 | |
27 | SL7A | 50S ribosomal protein L7Ae | polymer | 123 | 13351.5 | 1 | UniProt (Q4J8P1) Pfam (PF01248) In PDB | Sulfolobus acidocaldarius DSM 639 | Ribosomal protein L8e |
28 | AS8P | Small ribosomal subunit protein uS8 | polymer | 130 | 14624.2 | 1 | UniProt (O05636) Pfam (PF00410) In PDB | Sulfolobus acidocaldarius DSM 639 | 30S ribosomal protein S8 |
29 | AS2P, AS5P, A16S, AS8P | UNKNOWN | non-polymer | 103.1 | 57 | Chemie (UNK) |
Sequence modifications
A16S: 1 - 1503 (GenBank: 2440479486)
PDB | External Database | Details |
---|---|---|
- | U 1332690 | deletion |
- | C 1332689 | deletion |
G 1450 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 28 |
Total formula weight | 886610.1 | |
Non-Polymers* | Number of molecules | 57 |
Total formula weight | 5877.8 | |
All* | Total formula weight | 892487.9 |