8WQ4
Structural basis of translation inhibition by a valine tRNA-derived fragment
This is a non-PDB format compatible entry.
Functional Information from GO Data
Chain | GOid | namespace | contents |
AS4E | 0003723 | molecular_function | RNA binding |
AS4E | 0005840 | cellular_component | ribosome |
AS4E | 0006412 | biological_process | translation |
AS4E | 0019843 | molecular_function | rRNA binding |
AS4E | 1990904 | cellular_component | ribonucleoprotein complex |
AS4P | 0005840 | cellular_component | ribosome |
AS4P | 0006412 | biological_process | translation |
AS4P | 0019843 | molecular_function | rRNA binding |
AS4P | 0043226 | cellular_component | organelle |
AS4P | 1990904 | cellular_component | ribonucleoprotein complex |
AS5P | 0003735 | molecular_function | structural constituent of ribosome |
AS5P | 0005737 | cellular_component | cytoplasm |
AS5P | 0005840 | cellular_component | ribosome |
AS5P | 0006412 | biological_process | translation |
AS5P | 0019843 | molecular_function | rRNA binding |
AS5P | 0043229 | cellular_component | intracellular organelle |
AS5P | 1990904 | cellular_component | ribonucleoprotein complex |
AS7P | 0005840 | cellular_component | ribosome |
AS7P | 0006412 | biological_process | translation |
AS7P | 0019843 | molecular_function | rRNA binding |
AS7P | 1990904 | cellular_component | ribonucleoprotein complex |
AS8E | 0005840 | cellular_component | ribosome |
AS8E | 0006412 | biological_process | translation |
AS8E | 1990904 | cellular_component | ribonucleoprotein complex |
AS8P | 0005840 | cellular_component | ribosome |
AS8P | 0006412 | biological_process | translation |
AS8P | 0019843 | molecular_function | rRNA binding |
AS8P | 1990904 | cellular_component | ribonucleoprotein complex |
AS9P | 0005840 | cellular_component | ribosome |
AS9P | 0006412 | biological_process | translation |
AS9P | 1990904 | cellular_component | ribonucleoprotein complex |
S10P | 0000049 | molecular_function | tRNA binding |
S10P | 0005840 | cellular_component | ribosome |
S10P | 0006412 | biological_process | translation |
S10P | 1990904 | cellular_component | ribonucleoprotein complex |
S11P | 0005840 | cellular_component | ribosome |
S11P | 0006412 | biological_process | translation |
S11P | 0019843 | molecular_function | rRNA binding |
S11P | 1990904 | cellular_component | ribonucleoprotein complex |
S12P | 0005840 | cellular_component | ribosome |
S12P | 0006412 | biological_process | translation |
S12P | 0019843 | molecular_function | rRNA binding |
S12P | 1990904 | cellular_component | ribonucleoprotein complex |
S14P | 0005840 | cellular_component | ribosome |
S14P | 0006412 | biological_process | translation |
S14P | 0008270 | molecular_function | zinc ion binding |
S14P | 0019843 | molecular_function | rRNA binding |
S14P | 0046872 | molecular_function | metal ion binding |
S14P | 1990904 | cellular_component | ribonucleoprotein complex |
S15P | 0005840 | cellular_component | ribosome |
S15P | 0006412 | biological_process | translation |
S15P | 1990904 | cellular_component | ribonucleoprotein complex |
S17P | 0005840 | cellular_component | ribosome |
S17P | 0006412 | biological_process | translation |
S17P | 0019843 | molecular_function | rRNA binding |
S17P | 1990904 | cellular_component | ribonucleoprotein complex |
S19E | 0005840 | cellular_component | ribosome |
S19E | 0006412 | biological_process | translation |
S19E | 1990904 | cellular_component | ribonucleoprotein complex |
S3AE | 0005840 | cellular_component | ribosome |
S3AE | 0006412 | biological_process | translation |
S3AE | 1990904 | cellular_component | ribonucleoprotein complex |
SL7A | 0001682 | biological_process | tRNA 5'-leader removal |
SL7A | 0004526 | molecular_function | ribonuclease P activity |
SL7A | 0005737 | cellular_component | cytoplasm |
SL7A | 0005840 | cellular_component | ribosome |
SL7A | 0006412 | biological_process | translation |
SL7A | 0008033 | biological_process | tRNA processing |
SL7A | 0019843 | molecular_function | rRNA binding |
SL7A | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PROSITE/UniProt
site_id | PS00052 |
Number of Residues | 27 |
Details | RIBOSOMAL_S7 Ribosomal protein S7 signature. ErLinnLMrpgrnkGKKmlaynIVktT |
Chain | Residue | Details |
AS7P | GLU61-THR87 |
site_id | PS00053 |
Number of Residues | 18 |
Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GiiIISTPkGVMshrdGI |
Chain | Residue | Details |
AS8P | GLY103-ILE120 |
site_id | PS00054 |
Number of Residues | 23 |
Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALarA.GFiIgrieDvTPlPHD |
Chain | Residue | Details |
S11P | ILE97-ASP119 |
site_id | PS00055 |
Number of Residues | 8 |
Details | RIBOSOMAL_S12 Ribosomal protein S12 signature. RqPNSAvR |
Chain | Residue | Details |
S12P | ARG63-ARG70 |
site_id | PS00323 |
Number of Residues | 25 |
Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKefvefqVvpemIGryLGEYsiT |
Chain | Residue | Details |
S19P | ASN92-THR116 |
site_id | PS00360 |
Number of Residues | 19 |
Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGimGQadAarmAlARAL |
Chain | Residue | Details |
AS9P | GLY73-LEU91 |
site_id | PS00361 |
Number of Residues | 16 |
Details | RIBOSOMAL_S10 Ribosomal protein S10 signature. AqktGIqvsGPIpLPT |
Chain | Residue | Details |
S10P | ALA28-THR43 |
site_id | PS00362 |
Number of Residues | 31 |
Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. IrrHLfeyPkDksAkrgLeeVeskirrLasY |
Chain | Residue | Details |
S15P | ILE96-TYR126 |
site_id | PS00527 |
Number of Residues | 22 |
Details | RIBOSOMAL_S14 Ribosomal protein S14 signature. R.Cgsrdsviqkyg.LYLCRqCFR |
Chain | Residue | Details |
S14P | ARG21-ARG42 |
site_id | PS00529 |
Number of Residues | 23 |
Details | RIBOSOMAL_S24E Ribosomal protein S24e signature. YGsgISyARVnVYKDkdslqklE |
Chain | Residue | Details |
S24E | TYR72-GLU94 |
site_id | PS00548 |
Number of Residues | 37 |
Details | RIBOSOMAL_S3 Ribosomal protein S3 signature. AKyeklkeGtVykSgqqLekiIDraigiamLkpGvyG |
Chain | Residue | Details |
AS3P | ALA142-GLY178 |
site_id | PS00585 |
Number of Residues | 33 |
Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GElsrYkVliVMGNmd.GyISyGtgkak.QLrv.AI |
Chain | Residue | Details |
AS5P | GLY76-ILE108 |
site_id | PS00632 |
Number of Residues | 25 |
Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtiVYKkglArTiyqARqLI |
Chain | Residue | Details |
AS4P | LEU102-ILE126 |
site_id | PS00646 |
Number of Residues | 14 |
Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGvRHslGlkVRGQ |
Chain | Residue | Details |
S13P | ARG118-GLN131 |
site_id | PS00712 |
Number of Residues | 16 |
Details | RIBOSOMAL_S17E Ribosomal protein S17e signature. VsSKkVKNrIAGYlTR |
Chain | Residue | Details |
S17E | VAL41-ARG56 |
site_id | PS00961 |
Number of Residues | 9 |
Details | RIBOSOMAL_S28E Ribosomal protein S28e signature. ETEREARkL |
Chain | Residue | Details |
S28E | GLU72-LEU80 |
site_id | PS00962 |
Number of Residues | 12 |
Details | RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. LdTYLSAGVHIG |
Chain | Residue | Details |
AS2P | LEU33-GLY44 |
site_id | PS00963 |
Number of Residues | 25 |
Details | RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PevLIVtDprtDlqaIkEaskvGIP |
Chain | Residue | Details |
AS2P | PRO136-PRO160 |
site_id | PS01082 |
Number of Residues | 18 |
Details | RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CeekkIPYvyVpSKksLG |
Chain | Residue | Details |
SL7A | CYS70-GLY87 |
site_id | PS01168 |
Number of Residues | 33 |
Details | RIBOSOMAL_S27E Ribosomal protein S27e signature. KCrqCnneqviFSnAtfpvrClsCGaqIviPkG |
Chain | Residue | Details |
S27E | LYS20-GLY52 |
site_id | PS01193 |
Number of Residues | 20 |
Details | RIBOSOMAL_S8E Ribosomal protein S8e signature. RkiTGGqkgkn.RdKrKyELG |
Chain | Residue | Details |
AS8E | ARG10-GLY29 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 22 |
Details | ZN_FING: C4-type => ECO:0000255|HAMAP-Rule:MF_00371 |
Chain | Residue | Details |
S27E | CYS21-CYS43 | |
S14P | CYS22 | |
S14P | CYS37 | |
S14P | CYS40 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00777 |
Chain | Residue | Details |
S27A | CYS35 | |
S27A | CYS38 | |
S27A | CYS54 | |
S27A | CYS57 |