Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

8WQ4

Structural basis of translation inhibition by a valine tRNA-derived fragment

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
AS4E	0003723	molecular_function	RNA binding
AS4E	0003735	molecular_function	structural constituent of ribosome
AS4E	0005840	cellular_component	ribosome
AS4E	0006412	biological_process	translation
AS4E	0019843	molecular_function	rRNA binding
AS4E	0022627	cellular_component	cytosolic small ribosomal subunit
AS4E	1990904	cellular_component	ribonucleoprotein complex
AS4P	0003735	molecular_function	structural constituent of ribosome
AS4P	0005840	cellular_component	ribosome
AS4P	0006412	biological_process	translation
AS4P	0019843	molecular_function	rRNA binding
AS4P	0022627	cellular_component	cytosolic small ribosomal subunit
AS4P	0042274	biological_process	ribosomal small subunit biogenesis
AS4P	1990904	cellular_component	ribonucleoprotein complex
AS5P	0005737	cellular_component	cytoplasm
AS5P	0005840	cellular_component	ribosome
AS5P	0006412	biological_process	translation
AS5P	0019843	molecular_function	rRNA binding
AS5P	0043229	cellular_component	intracellular organelle
AS5P	1990904	cellular_component	ribonucleoprotein complex
AS7P	0000028	biological_process	ribosomal small subunit assembly
AS7P	0003729	molecular_function	mRNA binding
AS7P	0003735	molecular_function	structural constituent of ribosome
AS7P	0005840	cellular_component	ribosome
AS7P	0006412	biological_process	translation
AS7P	0019843	molecular_function	rRNA binding
AS7P	0022627	cellular_component	cytosolic small ribosomal subunit
AS7P	1990904	cellular_component	ribonucleoprotein complex
AS8E	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AS8E	0003735	molecular_function	structural constituent of ribosome
AS8E	0005840	cellular_component	ribosome
AS8E	0006412	biological_process	translation
AS8E	0022627	cellular_component	cytosolic small ribosomal subunit
AS8E	1990904	cellular_component	ribonucleoprotein complex
AS8P	0003735	molecular_function	structural constituent of ribosome
AS8P	0005840	cellular_component	ribosome
AS8P	0006412	biological_process	translation
AS8P	0019843	molecular_function	rRNA binding
AS8P	0022627	cellular_component	cytosolic small ribosomal subunit
AS8P	1990904	cellular_component	ribonucleoprotein complex
AS9P	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AS9P	0003723	molecular_function	RNA binding
AS9P	0003735	molecular_function	structural constituent of ribosome
AS9P	0005840	cellular_component	ribosome
AS9P	0006412	biological_process	translation
AS9P	0022627	cellular_component	cytosolic small ribosomal subunit
AS9P	1990904	cellular_component	ribonucleoprotein complex
S10P	0000049	molecular_function	tRNA binding
S10P	0003735	molecular_function	structural constituent of ribosome
S10P	0005840	cellular_component	ribosome
S10P	0006412	biological_process	translation
S10P	0022627	cellular_component	cytosolic small ribosomal subunit
S10P	1990904	cellular_component	ribonucleoprotein complex
S11P	0000028	biological_process	ribosomal small subunit assembly
S11P	0005840	cellular_component	ribosome
S11P	0006412	biological_process	translation
S11P	0019843	molecular_function	rRNA binding
S11P	0022627	cellular_component	cytosolic small ribosomal subunit
S11P	1990904	cellular_component	ribonucleoprotein complex
S12P	0003735	molecular_function	structural constituent of ribosome
S12P	0005840	cellular_component	ribosome
S12P	0006412	biological_process	translation
S12P	0019843	molecular_function	rRNA binding
S12P	0022627	cellular_component	cytosolic small ribosomal subunit
S12P	1990904	cellular_component	ribonucleoprotein complex
S14P	0003735	molecular_function	structural constituent of ribosome
S14P	0005840	cellular_component	ribosome
S14P	0006412	biological_process	translation
S14P	0008270	molecular_function	zinc ion binding
S14P	0019843	molecular_function	rRNA binding
S14P	0022627	cellular_component	cytosolic small ribosomal subunit
S14P	0046872	molecular_function	metal ion binding
S14P	1990904	cellular_component	ribonucleoprotein complex
S15P	0003735	molecular_function	structural constituent of ribosome
S15P	0005840	cellular_component	ribosome
S15P	0006412	biological_process	translation
S15P	0022627	cellular_component	cytosolic small ribosomal subunit
S15P	0070181	molecular_function	small ribosomal subunit rRNA binding
S15P	1990904	cellular_component	ribonucleoprotein complex
S17P	0003735	molecular_function	structural constituent of ribosome
S17P	0005840	cellular_component	ribosome
S17P	0006412	biological_process	translation
S17P	0019843	molecular_function	rRNA binding
S17P	0022627	cellular_component	cytosolic small ribosomal subunit
S17P	1990904	cellular_component	ribonucleoprotein complex
S19E	0000028	biological_process	ribosomal small subunit assembly
S19E	0003723	molecular_function	RNA binding
S19E	0003735	molecular_function	structural constituent of ribosome
S19E	0005840	cellular_component	ribosome
S19E	0006412	biological_process	translation
S19E	0022627	cellular_component	cytosolic small ribosomal subunit
S19E	1990904	cellular_component	ribonucleoprotein complex
S3AE	0005829	cellular_component	cytosol
S3AE	0005840	cellular_component	ribosome
S3AE	0006412	biological_process	translation
S3AE	1990904	cellular_component	ribonucleoprotein complex
SL7A	0001682	biological_process	tRNA 5'-leader removal
SL7A	0003735	molecular_function	structural constituent of ribosome
SL7A	0004526	molecular_function	ribonuclease P activity
SL7A	0005737	cellular_component	cytoplasm
SL7A	0005840	cellular_component	ribosome
SL7A	0006412	biological_process	translation
SL7A	0008033	biological_process	tRNA processing
SL7A	0019843	molecular_function	rRNA binding
SL7A	0022627	cellular_component	cytosolic small ribosomal subunit
SL7A	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PROSITE/UniProt

site_id	PS01193
Number of Residues	20
Details	RIBOSOMAL_S8E Ribosomal protein S8e signature. RkiTGGqkgkn.RdKrKyELG

Chain	Residue	Details
AS8E	ARG10-GLY29

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GiiIISTPkGVMshrdGI

Chain	Residue	Details
AS8P	GLY103-ILE120

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GElsrYkVliVMGNmd.GyISyGtgkak.QLrv.AI

Chain	Residue	Details
AS5P	GLY76-ILE108

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGvRHslGlkVRGQ

Chain	Residue	Details
S13P	ARG118-GLN131

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALarA.GFiIgrieDvTPlPHD

Chain	Residue	Details
S11P	ILE97-ASP119

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGimGQadAarmAlARAL

Chain	Residue	Details
AS9P	GLY73-LEU91

site_id	PS00548
Number of Residues	37
Details	RIBOSOMAL_S3 Ribosomal protein S3 signature. AKyeklkeGtVykSgqqLekiIDraigiamLkpGvyG

Chain	Residue	Details
AS3P	ALA142-GLY178

site_id	PS00361
Number of Residues	16
Details	RIBOSOMAL_S10 Ribosomal protein S10 signature. AqktGIqvsGPIpLPT

Chain	Residue	Details
S10P	ALA28-THR43

site_id	PS00961
Number of Residues	9
Details	RIBOSOMAL_S28E Ribosomal protein S28e signature. ETEREARkL

Chain	Residue	Details
S28E	GLU72-LEU80

site_id	PS00712
Number of Residues	16
Details	RIBOSOMAL_S17E Ribosomal protein S17e signature. VsSKkVKNrIAGYlTR

Chain	Residue	Details
S17E	VAL41-ARG56

site_id	PS01082
Number of Residues	18
Details	RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CeekkIPYvyVpSKksLG

Chain	Residue	Details
SL7A	CYS70-GLY87

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtiVYKkglArTiyqARqLI

Chain	Residue	Details
AS4P	LEU102-ILE126

site_id	PS00962
Number of Residues	12
Details	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. LdTYLSAGVHIG

Chain	Residue	Details
AS2P	LEU33-GLY44

site_id	PS00963
Number of Residues	25
Details	RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PevLIVtDprtDlqaIkEaskvGIP

Chain	Residue	Details
AS2P	PRO136-PRO160

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKefvefqVvpemIGryLGEYsiT

Chain	Residue	Details
S19P	ASN92-THR116

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. ErLinnLMrpgrnkGKKmlaynIVktT

Chain	Residue	Details
AS7P	GLU61-THR87

site_id	PS00529
Number of Residues	23
Details	RIBOSOMAL_S24E Ribosomal protein S24e signature. YGsgISyARVnVYKDkdslqklE

Chain	Residue	Details
S24E	TYR72-GLU94

site_id	PS00527
Number of Residues	22
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.Cgsrdsviqkyg.LYLCRqCFR

Chain	Residue	Details
S14P	ARG21-ARG42

site_id	PS01168
Number of Residues	33
Details	RIBOSOMAL_S27E Ribosomal protein S27e signature. KCrqCnneqviFSnAtfpvrClsCGaqIviPkG

Chain	Residue	Details
S27E	LYS20-GLY52

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. RqPNSAvR

Chain	Residue	Details
S12P	ARG63-ARG70

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. IrrHLfeyPkDksAkrgLeeVeskirrLasY

Chain	Residue	Details
S15P	ILE96-TYR126

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	22
Details	ZN_FING: C4-type => ECO:0000255\|HAMAP-Rule:MF_00777

Chain	Residue	Details
S27A	CYS35-CYS57
S14P	CYS22
S14P	CYS37
S14P	CYS40

site_id	SWS_FT_FI2
Number of Residues	4
Details	BINDING: BINDING => ECO:0000255\|HAMAP-Rule:MF_00777

Chain	Residue	Details
S27A	CYS35
S27A	CYS38
S27A	CYS54
S27A	CYS57

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)