8WHA
Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E | Histone H3.1 | polymer | 136 | 15301.0 | 2 | UniProt (P59226) Pfam (PF00125) In PDB | Arabidopsis thaliana (thale cress) | |
| 2 | B, F | Histone H4 | polymer | 103 | 11436.5 | 2 | UniProt (P59259) Pfam (PF15511) In PDB | Arabidopsis thaliana (thale cress) | |
| 3 | C, G | Histone H2A.6 | polymer | 130 | 13680.9 | 2 | UniProt (Q9LD28) Pfam (PF00125) Pfam (PF16211) In PDB | Arabidopsis thaliana (thale cress) | HTA1,Protein RESISTANT TO AGROBACTERIUM TRANSFORMATION 5 |
| 4 | D, H | Histone H2B.6 | polymer | 150 | 16474.5 | 2 | UniProt (O23629) Pfam (PF00125) In PDB | Arabidopsis thaliana (thale cress) | H2BAt,HTB9 |
| 5 | I | DNA (sense strand) | polymer | 147 | 45123.8 | 1 | synthetic construct | ||
| 6 | J | DNA (antisense strand) | polymer | 147 | 45626.0 | 1 | synthetic construct | ||
| 7 | K, L | ATP-dependent DNA helicase DDM1 | polymer | 765 | 86844.8 | 2 | UniProt (Q9XFH4) Pfam (PF00176) Pfam (PF00271) In PDB | Arabidopsis thaliana (thale cress) | Protein CHROMATIN REMODELING 1,AtCHR1,CHR01,Protein DECREASED DNA METHYLATION 1,AtDDM1,Protein SOMNIFEROUS 1,SWI/SNF2-related matrix-associated actin-dependent regulator of chromatin DDM1 |
| 8 | K, L | BERYLLIUM TRIFLUORIDE ION | non-polymer | 66.0 | 2 | Chemie (BEF) | |||
| 9 | K, L | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 2 | Chemie (ADP) |
Sequence modifications
K, L: 1 - 764 (UniProt: Q9XFH4)
| PDB | External Database | Details |
|---|---|---|
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 378225.0 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 986.4 | |
| All* | Total formula weight | 379211.4 |
