8WHA
Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2
Functional Information from PROSITE/UniProt
| site_id | PS00357 |
| Number of Residues | 23 |
| Details | HISTONE_H2B Histone H2B signature. REIQTavRlVLpGELaKHAVSEG |
| Chain | Residue | Details |
| D | ARG117-GLY139 |
| site_id | PS00322 |
| Number of Residues | 7 |
| Details | HISTONE_H3_1 Histone H3 signature 1. KAPRKQL |
| Chain | Residue | Details |
| A | LYS14-LEU20 |
| site_id | PS00959 |
| Number of Residues | 9 |
| Details | HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI |
| Chain | Residue | Details |
| A | PRO66-ILE74 |
| site_id | PS00047 |
| Number of Residues | 5 |
| Details | HISTONE_H4 Histone H4 signature. GAKRH |
| Chain | Residue | Details |
| B | GLY14-HIS18 |
| site_id | PS00046 |
| Number of Residues | 7 |
| Details | HISTONE_H2A Histone H2A signature. AGLqFPV |
| Chain | Residue | Details |
| C | ALA22-VAL28 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00541 |
| Chain | Residue | Details |
| K | ASP227 | |
| L | ASP227 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 10 |
| Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:17691833 |
| Chain | Residue | Details |
| D | LYS6 | |
| D | LYS11 | |
| D | LYS27 | |
| D | LYS32 | |
| D | LYS38 | |
| H | LYS6 | |
| H | LYS11 | |
| H | LYS27 | |
| H | LYS32 | |
| H | LYS38 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | MOD_RES: N6,N6-dimethyllysine => ECO:0000250|UniProtKB:Q9FFC0 |
| Chain | Residue | Details |
| D | LYS12 | |
| H | LYS12 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-acetyllysine; partial => ECO:0000269|PubMed:17691833 |
| Chain | Residue | Details |
| D | LYS39 | |
| H | LYS39 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:Q9LQQ4 |
| Chain | Residue | Details |
| D | LYS145 | |
| E | LYS9 | |
| H | LYS145 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine => ECO:0000269|PubMed:14610360, ECO:0000269|PubMed:15753571 |
| Chain | Residue | Details |
| A | SER10 | |
| A | SER28 | |
| E | SER10 | |
| E | SER28 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphothreonine => ECO:0000269|PubMed:15753571 |
| Chain | Residue | Details |
| A | THR11 | |
| E | THR11 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:16648464, ECO:0000269|PubMed:17174094, ECO:0000269|PubMed:17363895 |
| Chain | Residue | Details |
| A | LYS14 | |
| E | LYS14 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:15598823 |
| Chain | Residue | Details |
| A | LYS18 | |
| A | LYS23 | |
| E | LYS18 | |
| E | LYS23 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:14712277, ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:17174094, ECO:0000269|PubMed:17439305, ECO:0000269|PubMed:19503079, ECO:0000269|PubMed:24626927, ECO:0000269|PubMed:35298257 |
| Chain | Residue | Details |
| A | LYS27 | |
| E | LYS27 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:16299497 |
| Chain | Residue | Details |
| A | LYS36 | |
| E | LYS36 |
