8WGH
Cryo-EM structure of the red-shifted Fittonia albivenis PSI-LHCI
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1 | Chlorophyll a-b binding protein 1 | polymer | 246 | 26773.7 | 1 | Fittonia albivenis | ||
2 | 2 | Chlorophyll a-b binding protein 2 | polymer | 265 | 28533.5 | 1 | Fittonia albivenis | ||
3 | 3 | Chlorophyll a-b binding protein 3 | polymer | 272 | 29766.7 | 1 | Fittonia albivenis | ||
4 | 4 | Chlorophyll a-b binding protein 4 | polymer | 248 | 27510.3 | 1 | Fittonia albivenis | ||
5 | A | Photosystem I P700 chlorophyll a apoprotein A1 | polymer | 750 | 83138.1 | 1 | UniProt (A0A8A0WPY6) Pfam (PF00223) In PDB | Fittonia albivenis | PSI-A,PsaA |
6 | B | Photosystem I P700 chlorophyll a apoprotein A2 | polymer | 734 | 82472.7 | 1 | UniProt (G9IB61) Pfam (PF00223) In PDB | Fittonia albivenis | PSI-B,PsaB |
7 | C | Photosystem I iron-sulfur center | polymer | 81 | 9049.5 | 1 | UniProt (A4QJG7) Pfam (PF14697) In PDB | Fittonia albivenis | 9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC |
8 | D | Photosystem I reaction center subunit II | polymer | 190 | 21036.2 | 1 | Fittonia albivenis | ||
9 | E | Photosystem I reaction center subunit IV | polymer | 151 | 16282.4 | 1 | Fittonia albivenis | ||
10 | F | Photosystem I reaction center subunit III, chloroplastic | polymer | 221 | 24203.1 | 1 | UniProt (Q9SHE8) Pfam (PF02507) In PDB | Fittonia albivenis | Light-harvesting complex I 17 kDa protein,PSI-F |
11 | G | Photosystem I reaction center subunit VIII | polymer | 145 | 15874.0 | 1 | Fittonia albivenis | ||
12 | H | Photosystem I reaction center subunit VI | polymer | 145 | 15201.3 | 1 | Fittonia albivenis | ||
13 | I | Photosystem I reaction center subunit VIII | polymer | 36 | 3930.8 | 1 | UniProt (A0A8A9WIB9) Pfam (PF00796) In PDB | Fittonia albivenis | PSI-I |
14 | J | Photosystem I reaction center subunit IX | polymer | 44 | 5029.9 | 1 | UniProt (Q3C1K9) Pfam (PF01701) In PDB | Fittonia albivenis | PSI-J |
15 | K | Photosystem I reaction center subunit psaK | polymer | 132 | 13435.6 | 1 | Fittonia albivenis | ||
16 | L | Photosystem I reaction center subunit XI | polymer | 217 | 23094.7 | 1 | Fittonia albivenis | ||
17 | N | Photosystem I reaction center subunit N | polymer | 173 | 18673.1 | 1 | Fittonia albivenis | ||
18 | O | Photosystem I reaction center subunit O | polymer | 144 | 15404.8 | 1 | Fittonia albivenis | ||
19 | 2, 4, 3, 1 | CHLOROPHYLL B | non-polymer | 907.5 | 12 | Chemie (CHL) | |||
20 | 1, 2, 4, A, B... | CHLOROPHYLL A | non-polymer | 893.5 | 150 | Chemie (CLA) | |||
21 | 2, 1, O, 4, 3 | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 7 | Chemie (LUT) | |||
22 | 2, 1, 4, 3 | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 4 | Chemie (XAT) | |||
23 | F, 2, G, 1, B... | BETA-CAROTENE | non-polymer | 536.9 | 26 | Chemie (BCR) | |||
24 | 2, A, 1, B | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 5 | Chemie (LHG) | |||
25 | 1, 4 | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 3 | Chemie (LMG) | |||
26 | F, N, G, 1, J... | heptyl 1-thio-beta-D-glucopyranoside | non-polymer | 294.4 | 10 | Chemie (HTG) | |||
27 | A, B | PHYLLOQUINONE | non-polymer | 450.7 | 2 | Chemie (PQN) | |||
28 | A, C | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) | |||
29 | G, B | DODECYL-BETA-D-MALTOSIDE | non-polymer | 510.6 | 2 | Chemie (LMT) | |||
30 | B | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 1 | Chemie (DGD) |
Sequence modifications
A: 1 - 750 (UniProt: A0A8A0WPY6)
PDB | External Database | Details |
---|---|---|
Ser 248 | Val 248 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 18 |
Total formula weight | 459410.6 | |
Non-Polymers* | Number of molecules | 225 |
Total formula weight | 178104.5 | |
All* | Total formula weight | 637515.1 |