8VZB
Crystal Structure of 2-Hydroxacyl-CoA Lyase/Synthase ApbHACS from Alphaproteobacteria bacterium in the Complex with THDP, D-Lactyl-CoA, and ADP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Oxalyl-CoA decarboxylase | polymer | 560 | 59951.2 | 4 | UniProt (A0A3C0TX30) | Alphaproteobacteria bacterium | |
| 2 | E, JA, P, Z (A, D, B, C) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 3 | AA, F, KA, Q (C, A, D, B) | 2-[(2R)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-oxidanyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate | non-polymer | 442.3 | 4 | Chemie (8FL) | |||
| 4 | BA, G, LA, R (C, A, D, B) | S-{(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5,10,14-tetraoxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (2R)-2-hydroxypropanethioate | non-polymer | 839.6 | 4 | Chemie (UQ3) | |||
| 5 | CA, H, MA, S (C, A, D, B) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 4 | Chemie (ADP) | |||
| 6 | GA, I, K, QA, RA... (C, A, D, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 6 | Chemie (EDO) | |||
| 7 | J (A) | ACETIC ACID | non-polymer | 60.1 | 1 | Chemie (ACY) | |||
| 8 | DA, EA, IA, L, M... (C, A, D, B) | PHOSPHATE ION | non-polymer | 95.0 | 13 | Chemie (PO4) | |||
| 9 | HA, N (C, A) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 10 | NA, T (D, B) | ACETYL GROUP | non-polymer | 44.1 | 2 | Chemie (ACE) | |||
| 11 | FA (C) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 12 | TA, UA, VA, WA (A, B, C, D) | water | water | 18.0 | 1477 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 554 (UniProt: A0A3C0TX30)
| PDB | External Database | Details |
|---|---|---|
| Tyr -5 | - | expression tag |
| Phe -4 | - | expression tag |
| Gln -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Asn -1 | - | expression tag |
| Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 239804.8 | |
| Non-Polymers* | Number of molecules | 41 |
| Total formula weight | 8865.9 | |
| All* | Total formula weight | 248670.7 |
